View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10493_low_13 (Length: 292)

Name: NF10493_low_13
Description: NF10493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10493_low_13
NF10493_low_13
[»] chr3 (5 HSPs)
chr3 (12-278)||(8890078-8890343)
chr3 (24-175)||(6017571-6017722)
chr3 (33-244)||(31139870-31140078)
chr3 (24-119)||(6013243-6013337)
chr3 (24-158)||(4284395-4284530)
[»] chr7 (1 HSPs)
chr7 (23-170)||(23394267-23394413)
[»] chr8 (4 HSPs)
chr8 (24-150)||(33307070-33307196)
chr8 (24-161)||(13540243-13540382)
chr8 (24-161)||(13684091-13684231)
chr8 (55-161)||(29968944-29969048)
[»] scaffold0003 (1 HSPs)
scaffold0003 (22-161)||(357357-357497)
[»] chr1 (2 HSPs)
chr1 (46-161)||(3859347-3859464)
chr1 (103-161)||(28552874-28552933)
[»] chr6 (2 HSPs)
chr6 (25-161)||(11645668-11645805)
chr6 (103-161)||(244161-244220)
[»] chr5 (2 HSPs)
chr5 (68-131)||(22826842-22826905)
chr5 (103-150)||(26265975-26266023)
[»] chr4 (1 HSPs)
chr4 (59-161)||(45561617-45561715)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 278
Target Start/End: Original strand, 8890078 - 8890343
Alignment:
Q  12 ttggatgatggttgataagtcttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactaca 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8890078 ttggatgatggctgataagtcttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactaca 8890177  T
Q  112 aaatattagttttcattttcaggacaaataatgaagaaaaggaagaatttccaagaccataaaacttatcacggccttgagcacgaccgtgtgcatgtgc 211  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  8890178 aaatattagttttcattttcaaaacaaataatgaagaaaaggaagaatttccaagaccataaaacttatcacggccttgagcacgaccgcgtacatgtgc 8890277  T
Q  212 atagaaaaagaaggaataaagggcaggaagttgggcatggtatgtacgcctacgaagcacgattgtg 278  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8890278 atag-aaaataaggaataaaggacaggaagttgggcatggtatgtacgcctacgaagcacgattgtg 8890343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 6017571 - 6017722
Alignment:
Q  24 tgataagtcttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttt 123  Q
    ||||||||||| |||||| || |||| | ||||||||||||||||||||||||||| ||| ||| | ||||||||||| |||||| ||||||||||||||    
T  6017571 tgataagtcttgatttagtgtgtttt-agcatttgaattcaataatatttgtggaactttagtcttgctttagagctattttactgcaaaatattagttt 6017669  T
Q  124 tcattttcagga-caaataatgaagaaaaggaagaatttccaagaccataaaa 175  Q
    |||| || ||||  ||||||||||||||||||||||||| |||||||||||||    
T  6017670 tcatatttaggataaaataatgaagaaaaggaagaattttcaagaccataaaa 6017722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 244
Target Start/End: Complemental strand, 31140078 - 31139870
Alignment:
Q  33 ttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttca 132  Q
    ||||||||| || |||||| | |||||||| ||||||||||||| || ||||||| || |||| || || ||||||| ||||||| | |||| |||||||    
T  31140078 ttaatttagtgtgtttttagcgtttgaatttaataatatttgtgaaactttggtcttattttatagttattttactataaaatatcaatttttattttca 31139979  T
Q  133 ggacaaataatgaagaaaaggaagaatttccaagaccataaaacttatcacggccttgagcacgaccgtgtgcatgtgcatagaaaaagaaggaataaag 232  Q
     ||||||||| |||||||| ||||||||| ||||||||  ||| | | |||| || ||| ||| |||||||||||||| |    ||||||||||||| ||    
T  31139978 cgacaaataacgaagaaaatgaagaattttcaagaccaggaaattgagcacgaccctgaacaccaccgtgtgcatgtgga---gaaaagaaggaatacag 31139882  T
Q  233 ggcaggaagttg 244  Q
    ||||||||||||    
T  31139881 ggcaggaagttg 31139870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 6013243 - 6013337
Alignment:
Q  24 tgataagtcttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatatta 119  Q
    ||||||||||| |||||| || |||| | ||||||||||||||||||||||||||| ||| ||| | ||||||||||| |||||| ||||||||||    
T  6013243 tgataagtcttgatttagtgtgtttt-agcatttgaattcaataatatttgtggaactttagtcttgctttagagctattttactgcaaaatatta 6013337  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 4284395 - 4284530
Alignment:
Q  24 tgataagtcttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttt 123  Q
    ||||||||| |||||||  || ||||||   |||||||| ||||| |||||||| ||||| ||  |||||||||  || ||||||||||| | || ||||    
T  4284395 tgataagtcctaatttatagtgtttttagtctttgaattaaataaaatttgtgggattttagttttactttagaaatattttactacaaagtgttggttt 4284494  T
Q  124 tcattttcagga-caaataatgaagaaaaggaagaa 158  Q
    | ||||||| || |||||||||||||||||||||||    
T  4284495 ttattttcaagatcaaataatgaagaaaaggaagaa 4284530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 23394267 - 23394413
Alignment:
Q  23 ttgataagtcttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagtt 122  Q
    |||||||||  |||||||| || |||||| ||||||||||||||||||| ||||||  ||||||  || |||| ||||| ||||||||||||||||||||    
T  23394267 ttgataagtaataatttagtgtgtttttagcatttgaattcaataatatgtgtggagctttggtgtta-tttatagctattttactacaaaatattagtt 23394365  T
Q  123 ttcattttcaggacaaataatgaagaaaaggaagaatttccaagacca 170  Q
    || ||||| | ||||||||||||||||||||||||||||  |||||||    
T  23394366 ttaatttttaagacaaataatgaagaaaaggaagaatttttaagacca 23394413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 33307070 - 33307196
Alignment:
Q  24 tgataagtcttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttt 123  Q
    |||||||||||||| ||| || |||||| ||||||||||||||||||||||||||  ||||||| ||||||||||||| |||| ||||||| ||||||||    
T  33307070 tgataagtcttaatgtagggtgtttttagcatttgaattcaataatatttgtggatctttggtcttactttagagctattttattacaaaaaattagttt 33307169  T
Q  124 tcattttcaggacaaataatgaagaaa 150  Q
    |||||| ||   |||| ||||||||||    
T  33307170 tcatttccaaaccaaacaatgaagaaa 33307196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 13540382 - 13540243
Alignment:
Q  24 tgataagtcttaatttagcgtatttttaac-atttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagtt 122  Q
    ||||||||| |||||||| || |||| | | |||| |||| |||||||||| ||||  ||||||| |||||| |||||| |||||| ||||| |||||||    
T  13540382 tgataagtcataatttagggtgttttaagccatttcaatttaataatatttttggatctttggtcttactttggagctattttacttcaaaacattagtt 13540283  T
Q  123 ttcattttcaggac-aaataatgaagaaaaggaagaattt 161  Q
    || ||||| ||||| ||||||  |||||||||||||||||    
T  13540282 tttattttgaggaccaaataaacaagaaaaggaagaattt 13540243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 13684091 - 13684231
Alignment:
Q  24 tgataagtcttaatttagcgtatttttaac-atttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagtt 122  Q
    ||||||||| |||||||| || |||| | | |||| |||| |||||||||| ||||  ||||||| |||||| |||||| |||||| ||||| |||||||    
T  13684091 tgataagtcataatttagggtgttttaagccatttcaatttaataatatttttggatctttggtcttactttggagctattttacttcaaaacattagtt 13684190  T
Q  123 ttcattttc-aggac-aaataatgaagaaaaggaagaattt 161  Q
    || |||||  ||||| ||||||  |||||||||||||||||    
T  13684191 tttattttggaggaccaaataaacaagaaaaggaagaattt 13684231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 29969048 - 29968944
Alignment:
Q  55 tttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttcagga-caaataatgaagaaaagg 153  Q
    |||||||| ||||| ||| |||||||||| ||  |||||| |||||| ||||||||||| | |||||||| ||||| |||| ||||||||  | ||||||    
T  29969048 tttgaattaaataaaattggtggaattttagtt-tactttggagctattttactacaaagtgttagtttttattttgaggatcaaataat--aaaaaagg 29968952  T
Q  154 aagaattt 161  Q
    ||||||||    
T  29968951 aagaattt 29968944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 357497 - 357357
Alignment:
Q  22 gttgataagtcttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagt 121  Q
    ||||||||||||| |||||| ||||||||| |||||||||| |||||||||| |  || ||| ||| || | |||||||| ||||||| | || ||||||    
T  357497 gttgataagtcttgatttagggtatttttagcatttgaattaaataatatttattaaaattttgtcttattatagagctattttactatagaacattagt 357398  T
Q  122 tttcattttcagga-caaataatgaagaaaaggaagaattt 161  Q
    ||||||||||||||  |||||||||||||||| ||||||||    
T  357397 tttcattttcaggataaaataatgaagaaaagaaagaattt 357357  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 3859464 - 3859347
Alignment:
Q  46 tttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttcag--gacaaataat 143  Q
    |||||| ||||||||||||||||||||| ||||| | ||||| ||||||||||||| |||||||||||  ||||||||||||||||||   | |||||||    
T  3859464 tttttagcatttgaattcaataatatttatggaactctggtcttactttagagctaatttactacaaatcattagttttcattttcagaataaaaataat 3859365  T
Q  144 gaagaaaaggaagaattt 161  Q
    ||||| || |||||||||    
T  3859364 gaagataatgaagaattt 3859347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 28552874 - 28552933
Alignment:
Q  103 tttactacaaaatattagttttcattttcagga-caaataatgaagaaaaggaagaattt 161  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||    
T  28552874 tttactacaaaacattagttttcattttcaggaccaaataatgaagaaaaggatgaattt 28552933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 11645805 - 11645668
Alignment:
Q  25 gataagtcttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagtttt 124  Q
    ||||||||| |||||||  | |||||| |||||||||| ||||| ||| |||||||||| ||  || ||| |||  | ||||||||||| | ||||||||    
T  11645805 gataagtctaaatttagtatgtttttaccatttgaattaaataaaattggtggaattttagttttattttggagtaattttactacaaagtgttagtttt 11645706  T
Q  125 cattttcagga-caaataatgaagaaaaggaagaattt 161  Q
     |||||||  | ||||||||||||||||||||||||||    
T  11645705 tattttcataatcaaataatgaagaaaaggaagaattt 11645668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 244220 - 244161
Alignment:
Q  103 tttactacaaaatattagttttcattttcagga-caaataatgaagaaaaggaagaattt 161  Q
    ||||||| |||| |||||||||||||||||||| ||||||||||||| |||||| |||||    
T  244220 tttactataaaacattagttttcattttcaggaccaaataatgaagagaaggaataattt 244161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 22826905 - 22826842
Alignment:
Q  68 atatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttc 131  Q
    |||||||||||| ||||||| |||||||||| || |||||||||||| | ||||||||||||||    
T  22826905 atatttgtggaactttggtcttactttagagatattttactacaaaacaatagttttcattttc 22826842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 26265975 - 26266023
Alignment:
Q  103 tttactacaaaatattagttttcattttcagga-caaataatgaagaaa 150  Q
    |||||||||||| |||||||||||||||||||| |||||||| ||||||    
T  26265975 tttactacaaaacattagttttcattttcaggaccaaataataaagaaa 26266023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 45561715 - 45561617
Alignment:
Q  59 aattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttcaggacaaataatgaagaaaaggaagaa 158  Q
    |||||||||||||||||| || ||||||| |||| |||||||| |||||| ||    | ||||||||||||||| || ||||||||||| |||  |||||    
T  45561715 aattcaataatatttgtgcaactttggtcttactctagagctattttactgca----actagttttcattttcaagataaataatgaagcaaataaagaa 45561620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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