View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10493_low_15 (Length: 214)
Name: NF10493_low_15
Description: NF10493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10493_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 5316642 - 5316822
Alignment:
| Q |
15 |
gatgaaggtggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagaggaacaggattctagttctggatgaagctactg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5316642 |
gatgaaggtggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagaggaacaggattctagttctggatgaagctactg |
5316741 |
T |
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| Q |
115 |
cctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcacggttataaccgttg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5316742 |
cctccattgactctgccacagatgccattctacaaagagtaattagacaagaattttcagaatgcacggttataaccgttg |
5316822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 5309994 - 5310169
Alignment:
| Q |
15 |
gatgaaggtggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagaggaacaggattctagttctggatgaagctactg |
114 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |
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| T |
5309994 |
gatgaaggtggaaattggagcttgagacaaaggcaattgttttgtcttggaagagttctacttaagagaaacaaaattcttgttctggatgaagctactg |
5310093 |
T |
|
| Q |
115 |
cctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcacggttataac |
190 |
Q |
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|||| ||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
5310094 |
cctctattgactcttccacagatgcaatactacaaagagtaattagacaagaatttgcagaatgcacagtcataac |
5310169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 5287180 - 5287005
Alignment:
| Q |
15 |
gatgaaggtggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagaggaacaggattctagttctggatgaagctactg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||| || | |
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| T |
5287180 |
gatgaaggtggaaattggagcttgggacaaaggcaattgttttgccttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacag |
5287081 |
T |
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| Q |
115 |
cctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcacggttataac |
190 |
Q |
| |
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| |||||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
5287080 |
catccattgactctgcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataac |
5287005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 15128626 - 15128806
Alignment:
| Q |
15 |
gatgaaggtggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagaggaacaggattctagttctggatgaagctactg |
114 |
Q |
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|||||||||||||||||||||||||||||| | ||||| ||||| || ||||||||||||||||| |||||||| ||||| ||| ||||||||||||||| |
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| T |
15128626 |
gatgaaggtggaaattggagcttgggacaacgccaattattttgcctcggaagagttctacttaaaaggaacagaattcttgttttggatgaagctactg |
15128725 |
T |
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| Q |
115 |
cctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcacggttataaccgttg |
195 |
Q |
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| |||||||| || ||||||||||| |||||||||||| |||||||||||||||||| ||||||||| |||||||| |||| |
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| T |
15128726 |
catccattgattcagccacagatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttg |
15128806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 14946454 - 14946274
Alignment:
| Q |
15 |
gatgaaggtggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagaggaacaggattctagttctggatgaagctactg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||||||||| ||||| ||| |||| |||||||||| |
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| T |
14946454 |
gatgaaggtggaaattggagcttgggacaacgccaattgttttgcctcggaagagttctacttaagaggaacaaaattcttgttttggacgaagctactg |
14946355 |
T |
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| Q |
115 |
cctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcacggttataaccgttg |
195 |
Q |
| |
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| |||||||| || |||||||||||||||||||||||| |||| |||||||| |||| ||||||||| |||||||| |||| |
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| T |
14946354 |
catccattgattcagccacagatgccattctacaaagaataatcagacaagagtttgaagaatgcacagttataactgttg |
14946274 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 5279453 - 5279278
Alignment:
| Q |
15 |
gatgaaggtggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagaggaacaggattctagttctggatgaagctactg |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||| || || || ||||| ||||| |||||||| || | |
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| T |
5279453 |
gatgaaggtggaaattggagcttaggacagcggcaactgttttgccttggaagagttctacttaaaagaaatagaattcttgttctagatgaagcaacag |
5279354 |
T |
|
| Q |
115 |
cctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcacggttataac |
190 |
Q |
| |
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| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |||||||| |
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| T |
5279353 |
catccattgactcagccacagatgcaattctacaaagagtaattagacaagaattcgaagaatgcacagttataac |
5279278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 5348137 - 5347963
Alignment:
| Q |
16 |
atgaaggtggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagaggaacaggattctagttctggatgaagctactgc |
115 |
Q |
| |
|
||||||| | |||||||||| |||| ||||| ||||||||||| ||||||||||| || ||||| || || | ||||||||| |||||||||||||||| |
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| T |
5348137 |
atgaaggggaaaattggagcatgggccaaagacaattgttttgccttggaagagtccttcttaaaagaaataaaattctagttttggatgaagctactgc |
5348038 |
T |
|
| Q |
116 |
ctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcacggttataac |
190 |
Q |
| |
|
||| ||||| |||||||||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||| |
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| T |
5348037 |
ctctattgattctgccacagatgctattctacaaaaaataattagacaagaatttgcagaatgcacagttataac |
5347963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 31523622 - 31523446
Alignment:
| Q |
15 |
gatgaaggtggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagaggaacaggattctagttctggatgaagctactg |
114 |
Q |
| |
|
||||||||||||||||||||||| || || | ||| ||||||||||||||||||| ||||| |||||||||| ||| ||||||| ||||||||||| | |
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| T |
31523622 |
gatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctagatgaagctacag |
31523523 |
T |
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| Q |
115 |
cctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcacggttataacc |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
31523522 |
cctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataacc |
31523446 |
T |
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