View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10493_low_2 (Length: 450)
Name: NF10493_low_2
Description: NF10493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10493_low_2 |
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| [»] scaffold0478 (1 HSPs) |
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Alignment Details
Target: scaffold0478 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0478
Description:
Target: scaffold0478; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 93 - 434
Target Start/End: Complemental strand, 12251 - 11910
Alignment:
| Q |
93 |
cccccggaatctggaatatcatttgcttaggcacttgctggaccgaaagactacaagcttactcaacttcctccgaaagttgtgatggggaaatcggttc |
192 |
Q |
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| T |
12251 |
cccccggaatctggaatatcgtttgctcaggcacttgctggaccgaaagactacaagcttactcaacttcctccgaaagttgtgatggggaaatccgttc |
12152 |
T |
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| Q |
193 |
gagtcaaaatcagacaaaccgaatatgaatctgggctcattgactgtagcagcaacattcatggaagattaacacttcgcagaggtgatactcctttatc |
292 |
Q |
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| T |
12151 |
gagtcaaaatcacacaaaccgaatatgaatctgggctcattgactgtagcagcaacattcatggaaggttaacacttcgcagaggtgatactcctttatc |
12052 |
T |
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| Q |
293 |
tactatggctttaacgctgcaattgagcaatatgtggccaaatatacataattgggatataactcctctaggaaagggcttctttgagtttcatttcaac |
392 |
Q |
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| T |
12051 |
tattatggctttaaagctgcaattgagcaatatgtggccaaatatacataattgggatataactcctctaggaaagggcttctttgagtttcatttcaac |
11952 |
T |
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| Q |
393 |
actgtggaggatatgcgcagagtttgggcaatgggggttgtg |
434 |
Q |
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| T |
11951 |
actgtggaggatatgcgtagagtttgggcaatgggggttgtg |
11910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 129 - 435
Target Start/End: Original strand, 26153288 - 26153593
Alignment:
| Q |
129 |
gctggaccgaaagactacaagcttactcaacttcctccgaaagttgtgatggggaaatcggttcgagtcaaaatcagacaaaccgaatatgaatctgggc |
228 |
Q |
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| T |
26153288 |
gctggtccgaaagattatcagcttactcaacttcctccgaaagttgtgatggggaaaaccattcgcgttaaaatcatacaatctgaatacgcagctgggc |
26153387 |
T |
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| Q |
229 |
tcattgactgtagcagcaacattcatggaagattaacacttcgcagaggtgatactcctttatctactatggctttaacgctgcaattgagcaatatgtg |
328 |
Q |
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| T |
26153388 |
acgttgattgcagcagcaatatccatggcgg-ttgacgctgcacaaaggtgatacccctttatctactatggctttgaagttaaaattgagtaatttgtg |
26153486 |
T |
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| Q |
329 |
gccaaatatacataattgggatataactcctctaggaaagggcttctttgagtttcatttcaacactgtggaggatatgcgcagagtttgggcaatgggg |
428 |
Q |
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| T |
26153487 |
gccaaacatacataattgggatataactccactaggaaagggcttttttgaatttcatttcaatactgttgaggatatgcgaagagtttgggcaatgggg |
26153586 |
T |
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| Q |
429 |
gttgtga |
435 |
Q |
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||||||| |
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| T |
26153587 |
gttgtga |
26153593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 8680745 - 8680835
Alignment:
| Q |
2 |
acatttaattcttaacaaaatgatttacaatgatatggggatgggacagggacacccgaacaaagtgatattcaatttttcagtttattga |
92 |
Q |
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| T |
8680745 |
acatttaagccttaacaaaatgatttacaatgatacggggatgggacagggacacccgaacaaagtgatattcaatttttcagtttattga |
8680835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 43688682 - 43688740
Alignment:
| Q |
370 |
gcttctttgagtttcatttcaacactgtggaggatatgcgcagagtttgggcaatgggg |
428 |
Q |
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| T |
43688682 |
gcttctttgagttccatttcaacacagtggaggatatgcggaaaatttgggctatgggg |
43688740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 52314318 - 52314377
Alignment:
| Q |
369 |
ggcttctttgagtttcatttcaacactgtggaggatatgcgcagagtttgggcaatgggg |
428 |
Q |
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| T |
52314318 |
ggcttctttgagttccatttcaacacagtggaggatatgaggaaaatttgggctatgggg |
52314377 |
T |
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