View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10493_low_4 (Length: 421)
Name: NF10493_low_4
Description: NF10493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10493_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 5 - 414
Target Start/End: Complemental strand, 8793761 - 8793352
Alignment:
| Q |
5 |
caaaaacaagatattaaaataatttgaatgaagtattaaggattaaagaagtctatgatgtcgaatttgtacctgtaatatgcatagagatttaacatta |
104 |
Q |
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| T |
8793761 |
caaaaacaagatattaaaataatttgaatgaagtattaaggattaaagaagtcgatgatgtcgaatttgtacctgtaatatgcatagagatttaacatta |
8793662 |
T |
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| Q |
105 |
taaactgctttgaacggaacatcgaactgaccgattgaagctctaaccaacttggataagttgggttcataccctagtttttaccattttccatgaaaat |
204 |
Q |
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| T |
8793661 |
taaactgctttgaacggaacatcgaacgggcagattgaagctctaaccaacttggataagttgggttcataccctagttttaaccattttccataaaaat |
8793562 |
T |
|
| Q |
205 |
gatatgtgtgcaattccttaagaataggacaaccagaaaaaagctttttgaaatccttgatctccaaataaaccgattttaaatgtagggttttgagcga |
304 |
Q |
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| T |
8793561 |
gatctgtgtgcaattccttaagaataggacaaccagaaaaaagctttttgaaatccttgatctccaaataaaccgattttaaatgtagggctttgagcga |
8793462 |
T |
|
| Q |
305 |
gggaagattaaccgacaaaatcttagtcgacaataacaaattgttcaatttcagaaccacaaggttttgagagttgaaaaggacattggacaatctgatc |
404 |
Q |
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| T |
8793461 |
gggaagattaaccgacaaaatcttagtcgacaataccaaattgttcaatttcagaaccacaaggttttgagagttgaaaaggacattggacaatctgatc |
8793362 |
T |
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| Q |
405 |
aattcttctc |
414 |
Q |
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| T |
8793361 |
aattcatctc |
8793352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 387
Target Start/End: Complemental strand, 31270657 - 31270555
Alignment:
| Q |
285 |
aaatgtagggttttgagcgagggaagattaaccgacaaaatcttagtcgacaataacaaattgttcaatttcagaaccacaaggttttgagagttgaaaa |
384 |
Q |
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|||||||| |||||||||| |||||||||||| |||||||| |||| || || || | |||| ||||| ||||||||||||| ||||||| |||| |
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| T |
31270657 |
aaatgtagagttttgagcgtgggaagattaacggacaaaattttagccggcatgtgtaactctttcagtttcaaaaccacaaggtttagagagttaaaaa |
31270558 |
T |
|
| Q |
385 |
gga |
387 |
Q |
| |
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||| |
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| T |
31270557 |
gga |
31270555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 43685094 - 43685130
Alignment:
| Q |
280 |
attttaaatgtagggttttgagcgagggaagattaac |
316 |
Q |
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| T |
43685094 |
atttgaaatgtagggttttgagcgatggaagattaac |
43685130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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