View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10493_low_5 (Length: 394)

Name: NF10493_low_5
Description: NF10493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10493_low_5
NF10493_low_5
[»] chr4 (2 HSPs)
chr4 (1-376)||(22875610-22875985)
chr4 (197-332)||(22846080-22846215)
[»] chr7 (2 HSPs)
chr7 (344-372)||(27389307-27389335)
chr7 (340-372)||(27481412-27481444)
[»] chr3 (2 HSPs)
chr3 (344-372)||(29094305-29094333)
chr3 (344-372)||(49772786-49772814)
[»] chr2 (1 HSPs)
chr2 (344-372)||(9478223-9478251)
[»] chr1 (2 HSPs)
chr1 (342-370)||(44032119-44032147)
chr1 (341-369)||(52190059-52190087)


Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 22875985 - 22875610
Alignment:
Q  1 aaaaccaacggcataatcttcacgaaggatccttacatcgagaatgcagaacctcgcaaaatgtaaccaactaattaaccgttgttaatctttgatttcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22875985 aaaaccaacggcataatcttcacgaaggatccttacatcgagaaagcagaacctcgcaaaatgtaaccaactaattaaccgttgttaatctttgatttcg 22875886  T
Q  101 nnnnnnngttgattaagctttgttagttttcactaattaaacttaattaatttcgttttttgattgattgtttattttcagcgcgggaatttcatattcg 200  Q
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22875885 tttttttgttgattaagctttgttagttttcactaattaaactttattaatttcgttttttgattgattgtttattttcagcgcgggaatttcatattcg 22875786  T
Q  201 acgctatcggataaagatatcaccaaaattggcgaagctcaagtgtggcaagatcgttactatgatgcatttaaaaaggccgttgaaggcggcgtgttgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22875785 acgctatcggataaagatatcaccaaaattggcgaagctcaagtgtggcaagatcgttactatgatgcatttaaaaaggccgttgaaggcggcgtgttgg 22875686  T
Q  301 atcctcgtctggtactgtctatttcttcaattatcattgatgtttatcatataagtgtttatgtataagctaataa 376  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22875685 atcctcgtctggtactgtctatttcttcaattatcgttgatgtttatcatataagtgtttatgtataagctaataa 22875610  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 197 - 332
Target Start/End: Complemental strand, 22846215 - 22846080
Alignment:
Q  197 ttcgacgctatcggataaagatatcaccaaaattggcgaagctcaagtgtggcaagatcgttactatgatgcatttaaaaaggccgttgaaggcggcgtg 296  Q
    ||||||||||||||||| |||||| | ||| ||||| ||| ||||||||||| |||||   |||||||||||||||  ||| |||||||| |||||||||    
T  22846215 ttcgacgctatcggatacagatattatcaacattggtgaaactcaagtgtggaaagattcctactatgatgcatttcgaaaagccgttgatggcggcgtg 22846116  T
Q  297 ttggatcctcgtctggtactgtctatttcttcaatt 332  Q
    ||||||||||| ||||||| ||||||||||||||||    
T  22846115 ttggatcctcggctggtaccgtctatttcttcaatt 22846080  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 372
Target Start/End: Original strand, 27389307 - 27389335
Alignment:
Q  344 ttatcatataagtgtttatgtataagcta 372  Q
    |||||||||||||||||||||||||||||    
T  27389307 ttatcatataagtgtttatgtataagcta 27389335  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 27481444 - 27481412
Alignment:
Q  340 atgtttatcatataagtgtttatgtataagcta 372  Q
    |||||||| ||||||||||||||||||||||||    
T  27481444 atgtttattatataagtgtttatgtataagcta 27481412  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 372
Target Start/End: Original strand, 29094305 - 29094333
Alignment:
Q  344 ttatcatataagtgtttatgtataagcta 372  Q
    |||||||||||||||||||||||||||||    
T  29094305 ttatcatataagtgtttatgtataagcta 29094333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 372
Target Start/End: Complemental strand, 49772814 - 49772786
Alignment:
Q  344 ttatcatataagtgtttatgtataagcta 372  Q
    |||||||||||||||||||||||||||||    
T  49772814 ttatcatataagtgtttatgtataagcta 49772786  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 372
Target Start/End: Original strand, 9478223 - 9478251
Alignment:
Q  344 ttatcatataagtgtttatgtataagcta 372  Q
    |||||||||||||||||||||||||||||    
T  9478223 ttatcatataagtgtttatgtataagcta 9478251  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 370
Target Start/End: Complemental strand, 44032147 - 44032119
Alignment:
Q  342 gtttatcatataagtgtttatgtataagc 370  Q
    |||||||||||||||||||||||||||||    
T  44032147 gtttatcatataagtgtttatgtataagc 44032119  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 369
Target Start/End: Original strand, 52190059 - 52190087
Alignment:
Q  341 tgtttatcatataagtgtttatgtataag 369  Q
    |||||||||||||||||||||||||||||    
T  52190059 tgtttatcatataagtgtttatgtataag 52190087  T

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