View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10493_low_6 (Length: 390)
Name: NF10493_low_6
Description: NF10493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10493_low_6 |
 | |
|
| [»] scaffold1211 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 26375792 - 26376165
Alignment:
| Q |
18 |
acctaggtttatttaaaattagcccagttaaccctatttggatttcaaaaatcagtaaggaattctgtgtctgtactgcaaataaaa--gagtattgcat |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26375792 |
acctaggtttgtttaaaattagcccagttaaccctatttggatttcaaaaatcagtaaggaattctgtgtctgtactgcaaataaaaaagagtattgcat |
26375891 |
T |
|
| Q |
116 |
aataaaacagaatgaagtttcctgttcaatgaatatt----gtacagattcctattcttatccgtgcttccaatcatattttctcatagtagaatgtttg |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26375892 |
aataaaacagaatgaagtttcatgttcaatgaatattaattgtacagatttctattcttatccgtgcttccaatcatattttctcatagtagaatgtttg |
26375991 |
T |
|
| Q |
212 |
tatatgtataataattttctttgtagccttgggaagaaagactgcagacagctcaagagttgggtaccctggttttactgagtaatctggatccatccta |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26375992 |
tatatgtataataattttctttgtagccttgggaagaaagactacagacagctcaagagttgggtaccctggttttactgagtaatctggatccatccta |
26376091 |
T |
|
| Q |
312 |
cacgtcgtttgaagttgaggtatctaggatccaacttttcctcccattctaatatagttttggaagtacctttg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26376092 |
cacgtcgtttgaagttgaggtatctaggatccaacttttcctcccattctaatatagttttggaagtacctttg |
26376165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 235 - 385
Target Start/End: Original strand, 6 - 156
Alignment:
| Q |
235 |
tagccttgggaagaaagactgcagacagctcaagagttgggtaccctggttttactgagtaatctggatccatcctacacgtcgtttgaagttgaggtat |
334 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6 |
tagccttgggaagaaagactacagaaagctcaagagctgggtaccctggttttgctgagtgatctggatccatcctacacgtcgtttgaagtagaggtat |
105 |
T |
|
| Q |
335 |
ctaggatccaacttttcctcccattctaatatagttttggaagtacctttg |
385 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| | ||||||||||| |
|
|
| T |
106 |
ctaggatccaactttttctcccgttctaatatagtttcgaaagtacctttg |
156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University