View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10493_low_8 (Length: 364)
Name: NF10493_low_8
Description: NF10493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10493_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 29314409 - 29314565
Alignment:
| Q |
1 |
aagcccaaaagtataagggacactcaaataatagataacaatgttctagttatcataaacatgaaagttaagttaattaatattttcttttcctttaatg |
100 |
Q |
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| T |
29314409 |
aagcccaaaagtataagggacactcaaataatagataacaatgttctagttatcataaacatgaaagttaagttaattaatattttcttttcctttaatg |
29314508 |
T |
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| Q |
101 |
tatttcattagatcctatataaaatccactttactttatcttgtgagaaactttata |
157 |
Q |
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| T |
29314509 |
tatttcattagatcctatataaaatccactttactttatcttgtgagaaactttata |
29314565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 29314581 - 29314657
Alignment:
| Q |
207 |
ttatgcatattcataaattgtatttactacctatataaataagtgtttaaattaaacaataaatcttcaacttaatc |
283 |
Q |
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| T |
29314581 |
ttatgcatattcataaattgtatttactacctatataaataagtgtttaaattaaacaataaatcttcaacttaatc |
29314657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 276 - 343
Target Start/End: Original strand, 29314676 - 29314743
Alignment:
| Q |
276 |
acttaatctctgaatcatgtgaaatccatttaattagcctatgtggttaagatgttaaggactataat |
343 |
Q |
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| T |
29314676 |
acttaatctctgaatcatgtgaaatccatttaattagcctatgtggttaagatgttaaggactataat |
29314743 |
T |
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