View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10494_high_2 (Length: 390)
Name: NF10494_high_2
Description: NF10494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10494_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 51395174 - 51394805
Alignment:
| Q |
1 |
agaagcaacaaaacagaaacacatcaatgtcaaacatcatgcacaaccaagaagtgcaaaacttacaccaactattggatgagatggcttcacacgcaaa |
100 |
Q |
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| T |
51395174 |
agaagcaacaaaacagaaacacatcaatgtcaaacatcatgcacaaccaagaagtgcaaaacttacaccaactattggatgagatggcttcacacgcaaa |
51395075 |
T |
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| Q |
101 |
gctggtgatgttaaaatgattccttctaccatcacttcaatgtgagggcgtgatgccgcctacataaaaatgtagaaattcaaattcaaattccaacaaa |
200 |
Q |
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| T |
51395074 |
gctggtgatgttaaaatgattccttctaccatcacttcaatgtgagggcgtgatgccgcctacataaaaatgtagaaattaaaattaaaattccaacaaa |
51394975 |
T |
|
| Q |
201 |
gatttcataaatttaataacagaaggtatgcagaagatttcaatcatactttcaaaaccacagcccctccagttgagtgaccaaagagaaagcatggtat |
300 |
Q |
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| T |
51394974 |
gatttcataaatttaataacagaaggtatgcagaagatttcaatcatactttcaaaaccacagcccctccagttgagtgaccaaagagaaagcatggtat |
51394875 |
T |
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| Q |
301 |
tccaggattctctgatctaatcttttccaagaaagctccctgttaatattatcacaatcagtatgcaaag |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51394874 |
tccaggattctctgatctaatcttttccaagaaagctccctgttaatattatcacgatcagtatgcaaag |
51394805 |
T |
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