View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10494_high_3 (Length: 375)
Name: NF10494_high_3
Description: NF10494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10494_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 8191414 - 8191233
Alignment:
| Q |
19 |
ctattccctttacagacttttcaaaataaaagattagcacatgctgtaaaagagagcactcttgacagtctcattaccgagcttcttctgtggctcttgg |
118 |
Q |
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| T |
8191414 |
ctattccctttacagacttttcaaaataaaatattagcacatgctgtaaaagagagcactcttgacagtctcattaccgagcttcttctgtggctcttgg |
8191315 |
T |
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| Q |
119 |
atgataatgttccacgtatggatgatggaagccaggtgttgaaagctttgaatgtattgattcttaagattctggtaagaga |
200 |
Q |
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| T |
8191314 |
atgataatgttccacgtatggatgatggaagccagttgttgaaagctttgaatgtattgattcttaagattctggtaagaga |
8191233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 262 - 368
Target Start/End: Complemental strand, 8191171 - 8191064
Alignment:
| Q |
262 |
ggtagtaatgataatgtgtgtttttatgatgtaaatcataagtacaagttagtcgactgactag-tgatcatcaatacaggataatgcagatcgaacttc |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||| | |
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| T |
8191171 |
ggtagtaatgataatgtgtgtttttatgatgtaaatcataagtacaagttagttgactgactagttgatgatcaatacaggataatgcagatcgaactgc |
8191072 |
T |
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| Q |
361 |
atcctttg |
368 |
Q |
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| T |
8191071 |
atcctttg |
8191064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 42349220 - 42349044
Alignment:
| Q |
24 |
ccctttacagacttttcaaaataaaagattagcacatgctgtaaaagagagcactcttgacagtctcattaccgagcttcttctgtggctcttggatgat |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| |
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| T |
42349220 |
ccctttacagacttttcaaaataaaagattagcacatgctgtaaaagagagcactcttgatagcctcattacagagcttcttctgtggctcttggatgat |
42349121 |
T |
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| Q |
124 |
aatgttccacgtatggatgatggaagccaggtgttgaaagctttgaatgtattgattcttaagattctggtaagaga |
200 |
Q |
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||||||||||| |||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
42349120 |
aatgttccacgcatggatgatggaagccagttgttgaaagcattgaatgtattgatgcttaagattctggtaagaga |
42349044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 262 - 368
Target Start/End: Complemental strand, 42348984 - 42348878
Alignment:
| Q |
262 |
ggtagtaatgataatgtgtgtttttatgatgtaaatcataagtacaagttagtcgactgactagtgatcatcaatacaggataatgcagatcgaacttca |
361 |
Q |
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||||||||||||||||||| ||||||| || |||| | || | ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42348984 |
ggtagtaatgataatgtgtttttttatactgaaaataacaaatgcaagttagtttactgactagtgatcatcattacaggataatgcagatcgaacttca |
42348885 |
T |
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| Q |
362 |
tcctttg |
368 |
Q |
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||||||| |
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| T |
42348884 |
tcctttg |
42348878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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