View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10494_high_4 (Length: 373)
Name: NF10494_high_4
Description: NF10494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10494_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 50 - 361
Target Start/End: Original strand, 27131701 - 27132016
Alignment:
| Q |
50 |
tcgaggaatagttggacccattgtataagtaatatgaaataacaaaacaaaatttaaactaattattttatgcatgtgagactcctgtgtatggaaaata |
149 |
Q |
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| T |
27131701 |
tcgaggaatagttggacccattgtataagtaatataaaataacaaaacaaaatttaaactaattattttatgcatgtgagactcctgtatatggaaaata |
27131800 |
T |
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| Q |
150 |
atgctggaaaaatt-----taattatgcttaacttttcacattaccttggatatgccaaggcttgattgtaatttacttgaccattgttgctacctattc |
244 |
Q |
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| T |
27131801 |
atgctggaaaaatttcaactaattatgcttaacttttcacattaccttggatatgccaaggcttgattgtaatttacttgaccattgttgctacctattc |
27131900 |
T |
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| Q |
245 |
gatcagtaatctgnnnnnnncaatgaaacaacttaaacattgctttcattgaattagtnnnnnnncacatatattagtgagaatannnnnnnnctgatga |
344 |
Q |
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| T |
27131901 |
gatcagtaatctgaaaagaacaataaaacaacttaaacattgttttcattgaattagt-aaaaaacacatatattagtgagaatattttttttctgatga |
27131999 |
T |
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| Q |
345 |
tttaaaaataatattca |
361 |
Q |
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| T |
27132000 |
tttaaaaataatattca |
27132016 |
T |
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