View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10494_high_6 (Length: 325)
Name: NF10494_high_6
Description: NF10494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10494_high_6 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 1923975 - 1923680
Alignment:
| Q |
12 |
gagaagaatatttcttgttcataagcatgatcaccatcagccaacaacctttgaatcaaaacaagtgtttttaaagcaactgtccaactactagtcttga |
111 |
Q |
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| T |
1923975 |
gagaagaatatttcttgttcataagcacgatcaccatcagccaacaacctttgaatcaaaacaagtgtttttaaagcaactgtccaactgcttgtcttga |
1923876 |
T |
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| Q |
112 |
tcaaacgtttagagagtgtgttcacacaagaacttatgaatgcacgtgagtaacatgttaagcttagaatctctctaatatgtctgtcttcagctggatt |
211 |
Q |
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| T |
1923875 |
tcaaacgtttagagagtgtgttcacacaagaacttatgaatgctcgtgagtaacatgttaagcttagaatctctctaatgtgtctttcttcagctggatt |
1923776 |
T |
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| Q |
212 |
ttcatcatgttttgttgctttaacaatggctacttgaagatcacctattgaggcactgcttccaacttttgctatgcctatgcttgtttgatcttt |
307 |
Q |
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| T |
1923775 |
ttcatcatgttttgttgctttaacaatggctacttgaagatcacctattgaggcactgcttccaacttttgctatgcctatgcttgtttgatcttt |
1923680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 16241930 - 16241852
Alignment:
| Q |
135 |
acacaagaacttatgaatgcacgtgagtaacatgttaagcttagaatctctctaatatgtctgtcttcagctggatttt |
213 |
Q |
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| T |
16241930 |
acacaagcactactgaatgcatgtgaattacatgttaagcttagaatctccctaatgagtttctattcagctggatttt |
16241852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 1328652 - 1328360
Alignment:
| Q |
12 |
gagaagaatatttcttgttcataagcatgatcaccatcagccaacaacctttgaatcaaaacaagtgtttttaaagcaactgtccaactactagtcttga |
111 |
Q |
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| T |
1328652 |
gagaagaatatctcttgctcataagcagggtcaccttcttctagaagcctttgaatcaaaataagagttttcaaagccactgtccaatttttagtcttgc |
1328553 |
T |
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| Q |
112 |
tcaaacgtttagagagtgtgttcacacaagaacttatgaatgcacgtgagtaacatgttaagcttagaatctctctaatatgtctgtcttcagctggatt |
211 |
Q |
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| T |
1328552 |
tgagacgcctcgagagggtattaacacaagcactaatgaatgcgcgagagtaacatgttaaactcagaatctcccgtatatatttctcttcagccggata |
1328453 |
T |
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| Q |
212 |
ttcatcatgttttgttgctttaacaatggctacttgaagatcacctattgaggcactgcttccaacttttgctatgcctatgcttgtttgatc |
304 |
Q |
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| T |
1328452 |
ttcatcgtgcctagtcgctttcacaatagctacatcaaggtcagcaagtgaggtgctgcttcccaccattgctagtcctatgcttgtctgatc |
1328360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 15001 - 14923
Alignment:
| Q |
135 |
acacaagaacttatgaatgcacgtgagtaacatgttaagcttagaatctctctaatatgtctgtcttcagctggatttt |
213 |
Q |
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| T |
15001 |
acacaagcactactgaatgcatgtgaattacatgttaagcttagaatctccctaatgagtttctattcagctggatttt |
14923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 22013692 - 22013614
Alignment:
| Q |
135 |
acacaagaacttatgaatgcacgtgagtaacatgttaagcttagaatctctctaatatgtctgtcttcagctggatttt |
213 |
Q |
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| T |
22013692 |
acacaagcactactgaatgcatgtgaattacatgttaagcttagaatctccctaatgagtttctattcagctggatttt |
22013614 |
T |
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