View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10494_high_7 (Length: 320)
Name: NF10494_high_7
Description: NF10494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10494_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 45217679 - 45217358
Alignment:
| Q |
1 |
aaccagtggcagaagctgcctatatattcacaaccagcatcaaggaatcttcatgttgaggcagaaactgatggatcatcatccttgactagtgccatac |
100 |
Q |
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| T |
45217679 |
aaccagtggcagaagctgcctatatattcacaaccagcatcaaggaatcttcatgttgaggcagaaactgatggatcatcatccttgactagtgccatac |
45217580 |
T |
|
| Q |
101 |
ctacaagatcagggaaattttctccaagaaaggtgcaaaatgtatttggaggttataatgttacaagtttgaagaataaacaagaggagttgcagaagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217579 |
ctacaagatcagggaaattttctccaagaaaggtgcaaaatggatttggaggttataatgttacaagtttgaagaataaacaagaggagttgcagaagct |
45217480 |
T |
|
| Q |
201 |
tgatttgtccctcaaactctaagtgtttttaccattcatgtcatattcaatattgtgtcttaaatttttgtctgttcgctaa----tttgtctttgttat |
296 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| |
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| T |
45217479 |
tgacttgtccctcaaactctaagtgtttttaccattcatgtcatattcaatattgtgtcttaaatttttgtctgttcactaaaagctgatattttgttat |
45217380 |
T |
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| Q |
297 |
aatgaattaattctcctttgct |
318 |
Q |
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|||||||||||||||||||||| |
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| T |
45217379 |
aatgaattaattctcctttgct |
45217358 |
T |
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