View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10494_high_9 (Length: 243)
Name: NF10494_high_9
Description: NF10494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10494_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 6263881 - 6264123
Alignment:
| Q |
1 |
gattggtgtaaacttgaatttcctaaggctgaagttctgatcataaatttcacatctaaggactactttttacctcctttcatagataaaatgccaaatt |
100 |
Q |
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| T |
6263881 |
gattggtgtaaacttgaatttcctaaggctgaagttctgatcataaatttcacatctaaggactactttttacctcctttcatagataaaatgccaaatt |
6263980 |
T |
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| Q |
101 |
tgagagctctaatagtaataaactatagtgcatcatatgcatgccttcacaatgtttcagttttcaacaatttggccaacttgagaagcctgtggcttga |
200 |
Q |
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| T |
6263981 |
tgagagctctaatagtaataaactatagtgcatcatatacatgccttcacaatgtttcagttttcaacaatttggccaacttgagaagcctgtggcttga |
6264080 |
T |
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| Q |
201 |
aaaagtttccatccctcaatttggaggcattctcatggaaaac |
243 |
Q |
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| T |
6264081 |
aaaagtttccatccctcaatttggaggcattctcatggaaaac |
6264123 |
T |
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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 6272549 - 6272748
Alignment:
| Q |
16 |
gaatttcctaaggctgaagttctgatcataaatttcacatctaaggactactttttacctcctttcatagataaaatgccaaatttgagagctctaatag |
115 |
Q |
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| T |
6272549 |
gaatttcctaaggctgaagtactgattattaatttcacatccagtgaatacttcttacctcccttcataaatagaatgccaaaattgagagcattaatgg |
6272648 |
T |
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| Q |
116 |
taataaactatagtgcatcatatgcatgccttcacaatgtttcagttttcaacaatttggccaacttgagaagcctgtggcttgaaaaagtttccatccc |
215 |
Q |
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| T |
6272649 |
taataaaccacagcacttcatatgcttgtcttcacaatatatcggttttcaagaatttaaccaacttgaggagcctttggtttgaaaaagtttccatccc |
6272748 |
T |
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