View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10494_low_10 (Length: 283)

Name: NF10494_low_10
Description: NF10494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10494_low_10
NF10494_low_10
[»] chr4 (12 HSPs)
chr4 (114-263)||(44447455-44447604)
chr4 (50-104)||(47865297-47865351)
chr4 (50-104)||(52502407-52502461)
chr4 (50-104)||(15807658-15807712)
chr4 (50-104)||(47864491-47864545)
chr4 (54-103)||(35021804-35021853)
chr4 (55-103)||(35022460-35022508)
chr4 (54-103)||(47848834-47848883)
chr4 (50-104)||(15808484-15808538)
chr4 (50-104)||(52477647-52477701)
chr4 (50-104)||(52503508-52503562)
chr4 (54-104)||(4900259-4900309)
[»] scaffold0765 (1 HSPs)
scaffold0765 (50-104)||(360-414)
[»] chr8 (15 HSPs)
chr8 (50-104)||(11761040-11761094)
chr8 (50-103)||(9898967-9899020)
chr8 (50-103)||(26636262-26636315)
chr8 (50-104)||(1939452-1939506)
chr8 (50-104)||(9899656-9899710)
chr8 (50-104)||(17132743-17132797)
chr8 (50-104)||(23154312-23154366)
chr8 (50-104)||(26635512-26635566)
chr8 (50-104)||(37586724-37586778)
chr8 (50-103)||(11761748-11761801)
chr8 (50-103)||(37587370-37587423)
chr8 (50-104)||(9123129-9123183)
chr8 (50-104)||(1940146-1940200)
chr8 (50-104)||(9122725-9122779)
chr8 (61-104)||(23153550-23153593)
[»] chr7 (12 HSPs)
chr7 (50-104)||(4706636-4706690)
chr7 (50-104)||(4707471-4707525)
chr7 (50-104)||(3843233-3843287)
chr7 (50-104)||(20016752-20016806)
chr7 (50-104)||(23966317-23966371)
chr7 (50-103)||(20016035-20016088)
chr7 (52-104)||(26776312-26776364)
chr7 (54-103)||(43901601-43901650)
chr7 (50-104)||(21715074-21715128)
chr7 (50-104)||(21716622-21716676)
chr7 (50-103)||(43901313-43901366)
chr7 (52-104)||(21914643-21914695)
[»] chr6 (13 HSPs)
chr6 (54-104)||(28302171-28302221)
chr6 (54-104)||(28509852-28509902)
chr6 (50-103)||(9699159-9699212)
chr6 (50-104)||(24051257-24051311)
chr6 (50-104)||(29979228-29979282)
chr6 (53-104)||(24052001-24052052)
chr6 (50-104)||(6159756-6159810)
chr6 (50-104)||(9698451-9698505)
chr6 (50-103)||(6160454-6160507)
chr6 (50-103)||(22353272-22353325)
chr6 (50-104)||(22352963-22353017)
chr6 (50-104)||(34729940-34729994)
chr6 (50-103)||(18493705-18493758)
[»] chr5 (11 HSPs)
chr5 (50-104)||(35988857-35988911)
chr5 (50-103)||(35989585-35989638)
chr5 (50-104)||(15795726-15795780)
chr5 (50-104)||(4285162-4285216)
chr5 (50-104)||(30381577-30381631)
chr5 (54-103)||(31024332-31024381)
chr5 (50-104)||(4285734-4285788)
chr5 (50-104)||(30380917-30380971)
chr5 (50-104)||(31023589-31023643)
chr5 (50-104)||(16161935-16161988)
chr5 (50-103)||(23912195-23912248)
[»] chr3 (15 HSPs)
chr3 (50-104)||(20289593-20289647)
chr3 (50-103)||(3990848-3990901)
chr3 (50-103)||(26052179-26052232)
chr3 (50-103)||(54600136-54600189)
chr3 (56-104)||(3990119-3990167)
chr3 (50-104)||(25165901-25165955)
chr3 (50-104)||(25166749-25166803)
chr3 (50-104)||(35324998-35325052)
chr3 (50-104)||(35325768-35325822)
chr3 (50-104)||(46906869-46906923)
chr3 (50-104)||(26051472-26051526)
chr3 (54-103)||(12216851-12216900)
chr3 (54-104)||(1984848-1984898)
chr3 (54-104)||(39451972-39452022)
chr3 (55-104)||(12216096-12216145)
[»] chr2 (11 HSPs)
chr2 (50-104)||(21716442-21716496)
chr2 (50-104)||(24559555-24559609)
chr2 (50-104)||(2238825-2238879)
chr2 (50-104)||(24558842-24558896)
chr2 (50-104)||(28917108-28917162)
chr2 (50-104)||(28916287-28916341)
chr2 (50-104)||(29090892-29090946)
chr2 (54-104)||(2237984-2238034)
chr2 (50-104)||(21720201-21720255)
chr2 (50-102)||(3150227-3150279)
chr2 (50-103)||(9276828-9276881)
[»] scaffold0141 (2 HSPs)
scaffold0141 (50-104)||(10308-10362)
scaffold0141 (50-104)||(11141-11195)
[»] scaffold0817 (1 HSPs)
scaffold0817 (50-103)||(5012-5065)
[»] chr1 (5 HSPs)
chr1 (53-104)||(10771355-10771406)
chr1 (50-104)||(7655267-7655321)
chr1 (50-104)||(30983253-30983307)
chr1 (54-103)||(44503191-44503240)
chr1 (55-104)||(44870234-44870283)
[»] scaffold0903 (1 HSPs)
scaffold0903 (50-104)||(249-303)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 114 - 263
Target Start/End: Complemental strand, 44447604 - 44447455
Alignment:
Q  114 aagattttaaaaattgttatcgtaagggcacttgtcgtatataagtattgttagnnnnnnncaaaacaatatttataaaattggagattgattttgtcct 213  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  44447604 aagattttaaaaattgttattgtaagggcacttgtcgtatataagtattgttagaaaaaaacaaaacaatatttataaaattggagattgattttgtcct 44447505  T
Q  214 tttagactgacatcaaacattcaacgtgcattaatttatgcaaccatcgt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44447504 tttagactgacatcaaacattcaacgtgcattaatttatgcaaccatcgt 44447455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 47865297 - 47865351
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  47865297 acagggacgaaaatcaaaatcagcccaaattacagtgacggtttgcatatttaag 47865351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 52502461 - 52502407
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  52502461 acagggacgaaaatcaaaatgagcccaaattacagggacggtttgcatatttaag 52502407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 15807712 - 15807658
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  15807712 acagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaag 15807658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 47864545 - 47864491
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  47864545 acagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaag 47864491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 35021853 - 35021804
Alignment:
Q  54 ggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  35021853 ggacgaaaatcaaaattagcccaaattacaggaacagtttgcatatttaa 35021804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 35022460 - 35022508
Alignment:
Q  55 gacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  35022460 gacgaaaatcaaaatgagcccaaattacagggacggtttgcatatttaa 35022508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 47848834 - 47848883
Alignment:
Q  54 ggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  47848834 ggacgaaaatcaaaatgcgcccaaattacagggacggtttgcatatttaa 47848883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 15808484 - 15808538
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  || ||||||||||| || |||||||||||||||    
T  15808484 acagggacgaaaatcaaaattcgctcaaattacagggaccgtttgcatatttaag 15808538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 52477701 - 52477647
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||   | ||||||||||| ||||||||||||||||||    
T  52477701 acagggacgaaaatcaaaattcactcaaattacagggacggtttgcatatttaag 52477647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 52503508 - 52503562
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||| ||||||||||||||| || |||||||||||| || |||||||||||||||    
T  52503508 acagagacgaaaatcaaaatgagtccaaattacagggacagtttgcatatttaag 52503562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 4900309 - 4900259
Alignment:
Q  54 ggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||   |||||||||||||| |||| |||||||||||||    
T  4900309 ggacgaaaatcaaaacgcgcccaaattacagggacggattgcatatttaag 4900259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 360 - 414
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  360 acagggacgaaaatcaaaatgagcccaaattacagggacggtttgcatatttaag 414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 11761094 - 11761040
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  11761094 acagggacgaaaatcaaaatgagcccaaattacagggacggtttgcatatttaag 11761040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 9899020 - 9898967
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  9899020 acagggacgaaaatcaaaatgagcccaaattacagggacggtttgcatatttaa 9898967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 26636262 - 26636315
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  26636262 acagggacgaaaatcaaaattagcccaaattacagggacggtttgcatatttaa 26636315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 1939506 - 1939452
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  1939506 acagggacgaaaatcaaaatgagcccaaattacagggacagtttgcatatttaag 1939452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 9899656 - 9899710
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  9899656 acagggacgaaaatcaaaatgagcccaaattacagggacagtttgcatatttaag 9899710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 17132743 - 17132797
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  17132743 acagggacgaaaatcaaaatgagcccaaattacagggacagtttgcatatttaag 17132797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 23154312 - 23154366
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  23154312 acagggacgaaaatcaaaatgcgcccaaattacagggacggtttgcatatttaag 23154366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 26635566 - 26635512
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||    
T  26635566 acagggacgaaaatcaaaatgaacccaaattacagggacggtttgcatatttaag 26635512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 37586778 - 37586724
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||    
T  37586778 acagggacgaaaatcaaaatgagcctaaattacagggacggtttgcatatttaag 37586724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 11761748 - 11761801
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  11761748 acagggacgaaaatcaaaattagcccaaattacaggggcggtttgcatatttaa 11761801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 37587370 - 37587423
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  37587370 acagggacgaaaatcaaaatgagcccaaattacagggacagtttgcatatttaa 37587423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 9123129 - 9123183
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||| | || |||||||||||||||    
T  9123129 acagggacgaaaatcaaaatgagcccaaattacatggacagtttgcatatttaag 9123183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 1940146 - 1940200
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| |||||||| |||||  || |||||||||||||||    
T  1940146 acagggacgaaaatcaaaatgagcccaaactacagagacagtttgcatatttaag 1940200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 9122779 - 9122725
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||| ||||| |||||||| ||||||||||||||| ||||||| ||||||||||    
T  9122779 acaggaacgaatatcaaaatgagcccaaattacagggacggtttccatatttaag 9122725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 23153593 - 23153550
Alignment:
Q  61 aatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||  |||||||||||||| ||||||||||||||||||    
T  23153593 aatcaaaatgcgcccaaattacagggacggtttgcatatttaag 23153550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 4706690 - 4706636
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  4706690 acagggacgaaaatcaaaatccgcccaaattacagggacggtttgcatatttaag 4706636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 4707471 - 4707525
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  4707471 acagggacgaaaatcaaaatcagctcaaattacagggacggtttgcatatttaag 4707525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 3843233 - 3843287
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  3843233 acagggacgaaaatcaaaatgagcccaaattacagagacggtttgcatatttaag 3843287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 20016752 - 20016806
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  20016752 acagggacgaaaatcaaaatgagcccaaattacagggacagtttgcatatttaag 20016806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 23966371 - 23966317
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  23966371 acagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaag 23966317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 20016088 - 20016035
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||||||||| ||||||||||| | | |||||||||||||||||    
T  20016088 acagggacgaaaatcaaaataagcccaaattataaggacggtttgcatatttaa 20016035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 26776364 - 26776312
Alignment:
Q  52 agggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||  || ||||||||||| ||||||||||||||||||    
T  26776364 agggacgaaaatcaaaatgcgctcaaattacagggacggtttgcatatttaag 26776312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 43901601 - 43901650
Alignment:
Q  54 ggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||| |||||||||  || |||||||||||||||||||||||||||||    
T  43901601 ggacgataatcaaaatacgctcaaattacaggaacggtttgcatatttaa 43901650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 21715128 - 21715074
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||| ||  |||||||||||| ||| ||| ||||||||||    
T  21715128 acagggacgaaaatcaaaaacacgccaaattacagggacgatttacatatttaag 21715074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 21716622 - 21716676
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||| ||||| ||  |||||||||||||||| ||| ||||||||||    
T  21716622 acagggacgaaaaccaaaaacacgccaaattacaggaacgatttacatatttaag 21716676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 43901366 - 43901313
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    ||||||||||||||||||||   | ||||||||| | |||||||||||||||||    
T  43901366 acagggacgaaaatcaaaatacactcaaattacaaggacggtttgcatatttaa 43901313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 21914643 - 21914695
Alignment:
Q  52 agggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||| ||||| ||  |||||||||||| ||||||||||||| ||||    
T  21914643 agggacgaaaaccaaaaacacaccaaattacagggacggtttgcatatgtaag 21914695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 28302171 - 28302221
Alignment:
Q  54 ggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28302171 ggacgaaaatcaaaatcagcccaaattacagggacggtttgcatatttaag 28302221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 28509902 - 28509852
Alignment:
Q  54 ggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28509902 ggacgaaaatcaaaatcagcccaaattacagggacggtttgcatatttaag 28509852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 9699159 - 9699212
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  9699159 acagggacgaaaatcaaaattagcccaaattacagggacggtttgcatatttaa 9699212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 24051311 - 24051257
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  24051311 acagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaag 24051257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 29979228 - 29979282
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  29979228 acagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaag 29979282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 24052001 - 24052052
Alignment:
Q  53 gggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  24052001 gggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaag 24052052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 6159810 - 6159756
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||| ||||||||||||||| | ||||||||||||| ||||||||||||||||||    
T  6159810 acagagacgaaaatcaaaataaacccaaattacagggacggtttgcatatttaag 6159756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 9698505 - 9698451
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||    
T  9698505 acagggacgaaaatcaaaatgaacccaaattaaagggacggtttgcatatttaag 9698451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 6160454 - 6160507
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||||||||| || |||||||||||| || ||||||||||||||    
T  6160454 acagggacgaaaatcaaaatgagtccaaattacagggacagtttgcatatttaa 6160507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 22353272 - 22353325
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    ||||||||||||||||||||  || ||||||||||| |||||||||||||||||    
T  22353272 acagggacgaaaatcaaaatgcgctcaaattacagggacggtttgcatatttaa 22353325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 22353017 - 22352963
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  || ||||||| ||| ||||||||||||||||||    
T  22353017 acagggacgaaaatcaaaatgcgctcaaattatagggacggtttgcatatttaag 22352963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 34729994 - 34729940
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||| ||||||| ||  ||||||||||||||    
T  34729994 acagggacgaaaatcaaaatgagcccaatttacagggacaatttgcatatttaag 34729940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 18493705 - 18493758
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||| |||||  || |||||||||| ||||||||||||||||||    
T  18493705 acagggacgaaaattaaaatgcgctcaaattacagaaacggtttgcatatttaa 18493758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 35988911 - 35988857
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  35988911 acagggacgaaaatcaaaatgagcccaaattacagggacggtttgcatatttaag 35988857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 35989585 - 35989638
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  35989585 acagggacgaaaatcaaaattagcccaaattacagggacggtttgcatatttaa 35989638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 15795726 - 15795780
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  15795726 acagggacgaaaatcaaaatgagcccaaattacagggacagtttgcatatttaag 15795780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 4285216 - 4285162
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||| ||||||||||| ||||||||||||||| || |||||||||||||||    
T  4285216 acagggacaaaaatcaaaatgagcccaaattacagggacagtttgcatatttaag 4285162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 30381577 - 30381631
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||| |||||||||||| | ||||||||||||| ||||||||||||||||||    
T  30381577 acagggatgaaaatcaaaatgaacccaaattacagggacggtttgcatatttaag 30381631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 31024332 - 31024381
Alignment:
Q  54 ggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||| ||||||||||| ||||||||||||||| |||||||||||||||||    
T  31024332 ggacaaaaatcaaaatgagcccaaattacagggacggtttgcatatttaa 31024381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 4285734 - 4285788
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||| || |||||||| ||||||||||||||| ||||||| ||||||||||    
T  4285734 acagggacaaatatcaaaatgagcccaaattacagggacggtttacatatttaag 4285788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 30380971 - 30380917
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||| ||||||||||| |||||||||||||||  | |||||||||||||||    
T  30380971 acagggacaaaaatcaaaatgagcccaaattacaggggcagtttgcatatttaag 30380917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 31023643 - 31023589
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||| ||||||||||||||| ||||||||||||| | || |||||||||||||||    
T  31023643 acagagacgaaaatcaaaatgagcccaaattacaaggacagtttgcatatttaag 31023589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 16161935 - 16161988
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  || ||||||||| | ||||||||||||||||||    
T  16161935 acagggacgaaaatcaaaatacgctcaaattacatg-acggtttgcatatttaag 16161988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 23912195 - 23912248
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||| |||||  |  ||||||||||| |||||||||||||||||    
T  23912195 acagggacgaaaataaaaatgcgttcaaattacagggacggtttgcatatttaa 23912248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 20289593 - 20289647
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  20289593 acagggacgaaaatcaaaatgagcccaaattacagggacggtttgcatatttaag 20289647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 3990848 - 3990901
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  3990848 acagggacgaaaatcaaaattagcccaaattacagggacggtttgcatatttaa 3990901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 26052179 - 26052232
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  26052179 acagggacgaaaatcaaaatgagcccaaattacagggacggtttgcatatttaa 26052232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 54600189 - 54600136
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  54600189 acagggacgaaaatcaaaattagcccaaattacagggacggtttgcatatttaa 54600136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 3990167 - 3990119
Alignment:
Q  56 acgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3990167 acgaaaatcaaaatgagcccaaattacaggaacggtttgcatatttaag 3990119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 25165955 - 25165901
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  25165955 acagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaag 25165901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 25166749 - 25166803
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  25166749 acagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaag 25166803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 35325052 - 35324998
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  |||||||||||||| | ||||||||||||||||    
T  35325052 acagggacgaaaatcaaaatgtgcccaaattacagggatggtttgcatatttaag 35324998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 35325768 - 35325822
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  |||||||||||||| || |||||||||||||||    
T  35325768 acagggacgaaaatcaaaatgcgcccaaattacagggacagtttgcatatttaag 35325822  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 46906923 - 46906869
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| |||||||| |||||| || |||||||||||||||    
T  46906923 acagggacgaaaatcaaaatgagcccaaactacagggacagtttgcatatttaag 46906869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 26051526 - 26051472
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||    
T  26051526 acagggacgaaaatcaaaatgagcccaaattacaaggacaatttgcatatttaag 26051472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 12216851 - 12216900
Alignment:
Q  54 ggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    ||||||||||||||||  |||||||||||||| |||||||| ||||||||    
T  12216851 ggacgaaaatcaaaatgcgcccaaattacagggacggtttgtatatttaa 12216900  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 1984898 - 1984848
Alignment:
Q  54 ggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||  |||||||||||||| |||  |||||||||||||    
T  1984898 ggacgaaaatcaaaatgggcccaaattacagggacgaattgcatatttaag 1984848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 39452022 - 39451972
Alignment:
Q  54 ggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||  | |||||||||||| |||| |||||||||||||    
T  39452022 ggacgaaaatcaaaatttgtccaaattacagggacggattgcatatttaag 39451972  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 12216145 - 12216096
Alignment:
Q  55 gacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||  ||||||||||| || || |||||||||||||||    
T  12216145 gacgaaaatcaaaatgcgcccaaattacggggacagtttgcatatttaag 12216096  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 21716496 - 21716442
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  21716496 acagggacgaaaatcaaaatgagcccaaattacagggacggtttgcatatttaag 21716442  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 24559555 - 24559609
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  24559555 acagggacgaaaatcaaaatgagcccaaattacagggacggtttgcatatttaag 24559609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 2238825 - 2238879
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  2238825 acagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaag 2238879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 24558896 - 24558842
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  24558896 acagggacgaaaatcaaaatgagcccaaattacagggacagtttgcatatttaag 24558842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 28917108 - 28917162
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  28917108 acagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaag 28917162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 28916341 - 28916287
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  | |||||||||||| ||||||||||||||||||    
T  28916341 acagggacgaaaatcaaaattcgtccaaattacagggacggtttgcatatttaag 28916287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 29090946 - 29090892
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  || ||||||||||| ||||||||||||||||||    
T  29090946 acagggacgaaaatcaaaattcgctcaaattacagggacggtttgcatatttaag 29090892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 2238034 - 2237984
Alignment:
Q  54 ggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||  | |||||||||||| ||||||||||||||||||    
T  2238034 ggacgaaaatcaaaattcgtccaaattacagggacggtttgcatatttaag 2237984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 21720201 - 21720255
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| | |  |||||||||| ||||||||||||||||||    
T  21720201 acagggacgaaaatcaaaatgaacttaaattacagggacggtttgcatatttaag 21720255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 3150227 - 3150279
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatattta 102  Q
    ||||||| ||||||||||||  || ||||||||||| ||||||||||||||||    
T  3150227 acagggatgaaaatcaaaatgcgctcaaattacagggacggtttgcatattta 3150279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 9276881 - 9276828
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    ||||||||||||||||||||  || ||||||||| | || ||||||||||||||    
T  9276881 acagggacgaaaatcaaaatgcgctcaaattacaaggacagtttgcatatttaa 9276828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 10362 - 10308
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  10362 acagggacgaaaatcaaaattcgcccaaattacagggacggtttgcatatttaag 10308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 11141 - 11195
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||||||||||  |||||||||||||| |||||||| |||||||||    
T  11141 acagggacgaaaatcaaaattcgcccaaattacagggacggtttgtatatttaag 11195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0817 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0817
Description:

Target: scaffold0817; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 5065 - 5012
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    |||||||||||||||||||| ||||||||||||||| ||  |||||||||||||    
T  5065 acagggacgaaaatcaaaatgagcccaaattacagggacattttgcatatttaa 5012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 10771406 - 10771355
Alignment:
Q  53 gggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||  || ||||||||||| ||||||||||||||||||    
T  10771406 gggacgaaaatcaaaatgcgctcaaattacagggacggtttgcatatttaag 10771355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 7655267 - 7655321
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    ||||||||||||| ||||| ||  |||||||||||||||| ||| ||||||||||    
T  7655267 acagggacgaaaaccaaaaacacgccaaattacaggaacgatttacatatttaag 7655321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 30983307 - 30983253
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||   | |||||||| |||||||| |||||||||||||    
T  30983307 acagggacgaaaatcaaaacgcgtccaaattataggaacggattgcatatttaag 30983253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 44503240 - 44503191
Alignment:
Q  54 ggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaa 103  Q
    ||||||||||||||||  || ||||||||| | |||||||||||||||||    
T  44503240 ggacgaaaatcaaaatgcgctcaaattacaaggacggtttgcatatttaa 44503191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 44870283 - 44870234
Alignment:
Q  55 gacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||  | |||||||||||| | ||||||||||||||||    
T  44870283 gacgaaaatcaaaatgcgtccaaattacagggatggtttgcatatttaag 44870234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0903 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0903
Description:

Target: scaffold0903; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 303 - 249
Alignment:
Q  50 acagggacgaaaatcaaaatcagcccaaattacaggaacggtttgcatatttaag 104  Q
    |||||||||||||||||||| || | |||||||| | |||||||| |||||||||    
T  303 acagggacgaaaatcaaaatgagtctaaattacaaggacggtttgtatatttaag 249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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