View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10494_low_11 (Length: 252)
Name: NF10494_low_11
Description: NF10494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10494_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 33038013 - 33038256
Alignment:
| Q |
10 |
ttctaaaatcaactttgatatctctaaaagtgaaacgaaagattcacttatgtataaaagagtaaaatctcatttataaaaattgaatgaattcttattt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33038013 |
ttctaaaatcaactttgatatctctaaaagtgaaacgaaagattgacttaggtataaaagagtaaaatctcatttataaaaattgaatgaattcttattt |
33038112 |
T |
|
| Q |
110 |
gagttaggggacaaaagccta------------nnnnnnnnatttatgcagacataaagcaacacaaagatacgtacaaaaaataacttaagcaatgcaa |
197 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33038113 |
gagttaggggacaaaagcctatttaagatttatttttttttatttatgcagacataaagcaacacaaagatacgtacaaaaaa-aacttaagcaatgcaa |
33038211 |
T |
|
| Q |
198 |
aatgacaaaagtgacgtaaaatgatgaagtcacccacgacctttg |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33038212 |
aatgacaaaagtgacgtaaaatgatgaagtcacccacgacctttg |
33038256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University