View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10494_low_13 (Length: 240)
Name: NF10494_low_13
Description: NF10494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10494_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 49591861 - 49591639
Alignment:
| Q |
18 |
aacatgaggtggattatctagcaagtaaaggaaaccaagacgtgaagagattgttcaacaaattggattctacagtcctcaataggattccaaggggacc |
117 |
Q |
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| T |
49591861 |
aacatgaggtggattatctagcaagtaaaggaaaccaagacgtgaagagattgttcaacaaattggattctacagttctcaataggattccaaggggacc |
49591762 |
T |
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| Q |
118 |
tgtgaaagaaaagaagtacagatgattttagatcttctttgtcacgcatgaaatataaaatatatgatgtactctctttaatttcatattcagtttacta |
217 |
Q |
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| T |
49591761 |
tgtgaaagaaaagaagtacagatgattttagatcttctttgtcacgcatgaaatataaaatttatgatgtactctctttaatttcatattcagtttacta |
49591662 |
T |
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| Q |
218 |
ccttaagcatgtaaatgaataat |
240 |
Q |
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| T |
49591661 |
ccttaagcatgtaaatcaataat |
49591639 |
T |
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