View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10494_low_14 (Length: 238)
Name: NF10494_low_14
Description: NF10494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10494_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 20531700 - 20531922
Alignment:
| Q |
1 |
agtggcagcttccattaatgattgtttggaaaattcagaagctggtgaaacaatagatgaaggagatgaatttagtgacgtggtggaaaaaggaggtgag |
100 |
Q |
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| T |
20531700 |
agtggcagcttccattaatgattgtttggaaaactcagaagctggtgaaacaatagatgaaggagatgaatttagtgacgtggtggaaaaaggaggtgag |
20531799 |
T |
|
| Q |
101 |
aatgaaataggtttttggataggattgtgctcaaaactattcaaattacgaattgtttctgaccattcgttgttggtgttcataatcccagaaacaacta |
200 |
Q |
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| T |
20531800 |
aatgaaataggtttttggataggattgtgctcaaaactattcaaattacgaattgtttctgaccattcgttgttggtgttcataatcccagaaacaacta |
20531899 |
T |
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| Q |
201 |
gtgaccattcttcttcatcatca |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
20531900 |
gtgaccattcttcttcatcatca |
20531922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 28297054 - 28297231
Alignment:
| Q |
3 |
tggcagcttccattaatgattgtttggaaaattcagaagctggtgaaacaatagatgaaggagatgaatttagtgacgtggtggaaaaaggaggtgagaa |
102 |
Q |
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| T |
28297054 |
tggcagtttccattaacaattgtttggaaaactcagaagcaggtgaaacaatagatgaaggagatgaatatagcaatgtggctaaaaaggtaggtgaaaa |
28297153 |
T |
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| Q |
103 |
tgaaataggtttttggataggattgtgctcaaaactattcaaattacgaattgtttctgaccattcgttgttggtgtt |
180 |
Q |
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| T |
28297154 |
tgaaacaggtttctggataggattttgctcgaaactattcaaattacggattgtttctaaccattcgttgttggtgtt |
28297231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 28295707 - 28295530
Alignment:
| Q |
2 |
gtggcagcttccattaatgattgtttggaaaattcagaagctggtgaaacaatagatgaaggagatgaatttagtgacgtggtggaaaaaggaggtgaga |
101 |
Q |
| |
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|||||| | |||||||| |||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| || || | |||||| | ||||| |
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| T |
28295707 |
gtggcaacatccattaacgattgtttggaaaactcataagcaggtgaaacaatagatgaaggagatgaatttagcgatgttgcataaaaagtatgtgagg |
28295608 |
T |
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| Q |
102 |
atgaaataggtttttggataggattgtgctcaaaactattcaaattacgaattgtttctgaccattcgttgttggtgt |
179 |
Q |
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|||||| |||||| |||||||| || | ||||||| ||||||||||||| ||||||| ||||||||| || ||||||| |
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| T |
28295607 |
atgaaacaggtttatggatagggtttttctcaaaattattcaaattacggattgtttttgaccattctttattggtgt |
28295530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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