View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10494_low_16 (Length: 225)

Name: NF10494_low_16
Description: NF10494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10494_low_16
NF10494_low_16
[»] chr4 (7 HSPs)
chr4 (7-209)||(4337083-4337285)
chr4 (7-209)||(4319205-4319416)
chr4 (18-123)||(4122642-4122747)
chr4 (7-123)||(4132616-4132729)
chr4 (16-123)||(4346553-4346660)
chr4 (16-123)||(4362742-4362849)
chr4 (173-205)||(4132540-4132572)
[»] chr6 (7 HSPs)
chr6 (7-123)||(5065447-5065563)
chr6 (8-118)||(5253715-5253825)
chr6 (7-123)||(5126627-5126743)
chr6 (17-123)||(5177930-5178036)
chr6 (17-123)||(5279755-5279861)
chr6 (7-123)||(5346210-5346326)
chr6 (17-123)||(5688901-5689007)
[»] chr7 (1 HSPs)
chr7 (7-123)||(36212919-36213035)
[»] chr3 (2 HSPs)
chr3 (7-111)||(47985403-47985507)
chr3 (7-111)||(48003977-48004081)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 4337083 - 4337285
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337083 tgaggagtggcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 4337182  T
Q  107 tatctcatatatcatgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagagga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337183 tatctcatatatcatgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagagga 4337282  T
Q  207 tct 209  Q
    |||    
T  4337283 tct 4337285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 4319416 - 4319205
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||  ||||||||| ||| ||||||||||||||||||| || || ||||||||||| ||||||||||||||||  |||||||||| |||| |||||    
T  4319416 tgaggagtggcagagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtt 4319317  T
Q  107 tatctcatatatcatga---------cgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctg 197  Q
    |||||||||||| ||||         ||||| ||| |||||||||||| |||||||| |||||||||| ||||| |  |||||| |||||||||||||||    
T  4319316 tatctcatatatgatgaaccagtcgtcgaaatattggagcaatgtcatacaccagataagaatgttcttgttgatatcggtgatgaaaatgaatgtgctg 4319217  T
Q  198 ccaagaggatct 209  Q
    ||| ||||||||    
T  4319216 ccatgaggatct 4319205  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 4122747 - 4122642
Alignment:
Q  18 agagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatata 117  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||  |||||||||| |||| ||||||||||||||||    
T  4122747 agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 4122648  T
Q  118 tcatga 123  Q
    | ||||    
T  4122647 tgatga 4122642  T

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Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 4132729 - 4132616
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||  ||||||||| ||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||  |||||||||| |||| |||||    
T  4132729 tgaggagtggcagagagtagtatcaaatatggaacctggtgacaaagtcgagattgt---tgtttttgggaacagtttcattgtgatgaagacagcagtt 4132633  T
Q  107 tatctcatatatcatga 123  Q
    |||||||||||| ||||    
T  4132632 tatctcatatatgatga 4132616  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 4346553 - 4346660
Alignment:
Q  16 gcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcata 115  Q
    ||||||| || |||| ||||||||||||||||| ||||| ||||| ||||||||| | | ||||| |   ||||||| || |||| ||||||||||||||    
T  4346553 gcagagaatgatatcgaatatggaacctggtgacaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagacagcagtttatctcata 4346652  T
Q  116 tatcatga 123  Q
    ||| ||||    
T  4346653 tatgatga 4346660  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 4362742 - 4362849
Alignment:
Q  16 gcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcata 115  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||| ||| ||||  | | ||||| |   ||||||| || |||| ||||||||||||||    
T  4362742 gcagagagtgatatcaaatatggaacctggtgacaaagtggagatagttattgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcata 4362841  T
Q  116 tatcatga 123  Q
    ||| ||||    
T  4362842 tatgatga 4362849  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 4132572 - 4132540
Alignment:
Q  173 agtggtgataaaaatgaatgtgctgccaagagg 205  Q
    ||||||||| |||||||||||||||||||||||    
T  4132572 agtggtgatgaaaatgaatgtgctgccaagagg 4132540  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 5065563 - 5065447
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| ||||||||| ||||||| ||| ||||||||  ||||||| ||  ||||||||||||||| |||| |||   |||||| |||||||||||||    
T  5065563 tgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtt 5065464  T
Q  107 tatctcatatatcatga 123  Q
    |||||||||||| ||||    
T  5065463 tatctcatatatgatga 5065447  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 5253715 - 5253825
Alignment:
Q  8 gaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagttt 107  Q
    ||||||| ||| |||||  ||| || ||| ||||||||  ||||||| ||| ||||||||||||||| ||||||||  ||||||| |||||| |||||||    
T  5253715 gaggaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagttt 5253814  T
Q  108 atctcatatat 118  Q
    |||||||||||    
T  5253815 atctcatatat 5253825  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 5126743 - 5126627
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| | ||||||| ||||||| ||| ||| ||||| | ||||| ||||||||||||||||||  |||| |||  ||||||| || |||| | |||    
T  5126743 tgaggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtt 5126644  T
Q  107 tatctcatatatcatga 123  Q
    |||||||||||| ||||    
T  5126643 tatctcatatatgatga 5126627  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 5177930 - 5178036
Alignment:
Q  17 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 116  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| ||||||||||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5177930 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5178029  T
Q  117 atcatga 123  Q
    || ||||    
T  5178030 atgatga 5178036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 5279755 - 5279861
Alignment:
Q  17 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 116  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| ||||||||||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5279755 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5279854  T
Q  117 atcatga 123  Q
    || ||||    
T  5279855 atgatga 5279861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 5346210 - 5346326
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    ||||||||  |||||||| ||||||| ||| ||||||||| | ||||| ||| |||| |||||| ||| |||  |||  ||||||| || |||| || ||    
T  5346210 tgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatt 5346309  T
Q  107 tatctcatatatcatga 123  Q
    |||||||||||| ||||    
T  5346310 tatctcatatatgatga 5346326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 5689007 - 5688901
Alignment:
Q  17 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 116  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| |||||  |||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5689007 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5688908  T
Q  117 atcatga 123  Q
    || ||||    
T  5688907 atgatga 5688901  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 36213035 - 36212919
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| ||||||| | ||||||| ||| ||||||||||||||| | ||| ||||||||||||||| ||||| ||  ||||||| || |||| |  ||    
T  36213035 tgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatt 36212936  T
Q  107 tatctcatatatcatga 123  Q
    |||||||| ||| ||||    
T  36212935 tatctcatttatgatga 36212919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 47985507 - 47985403
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| | ||||||| ||||||| ||| ||||| ||| | ||||| ||| | ||||||||||||| |||  |||  ||||||| ||||| | |||||    
T  47985507 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 47985408  T
Q  107 tatct 111  Q
    |||||    
T  47985407 tatct 47985403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 48004081 - 48003977
Alignment:
Q  7 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 106  Q
    |||||||| | ||||||| ||||||| ||| ||||| ||| | ||||| ||| | ||||||||||||| |||  |||  ||||||| ||||| | |||||    
T  48004081 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 48003982  T
Q  107 tatct 111  Q
    |||||    
T  48003981 tatct 48003977  T

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