View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10494_low_2 (Length: 390)

Name: NF10494_low_2
Description: NF10494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10494_low_2
NF10494_low_2
[»] chr1 (19 HSPs)
chr1 (18-380)||(40662870-40663233)
chr1 (136-263)||(34915014-34915141)
chr1 (113-208)||(3515821-3515916)
chr1 (136-235)||(16556456-16556555)
chr1 (138-321)||(28267921-28268100)
chr1 (138-208)||(11049253-11049323)
chr1 (44-98)||(51500080-51500134)
chr1 (134-235)||(47899231-47899330)
chr1 (136-204)||(7524120-7524188)
chr1 (136-207)||(28287346-28287417)
chr1 (147-208)||(28083909-28083970)
chr1 (136-208)||(30557507-30557577)
chr1 (146-199)||(36660503-36660556)
chr1 (155-208)||(47892417-47892470)
chr1 (136-208)||(1514346-1514418)
chr1 (136-208)||(30850409-30850481)
chr1 (136-171)||(2555941-2555976)
chr1 (201-235)||(52059303-52059337)
chr1 (162-207)||(51500870-51500915)
[»] chr5 (13 HSPs)
chr5 (136-326)||(15368259-15368448)
chr5 (144-233)||(2937600-2937689)
chr5 (136-232)||(29821954-29822054)
chr5 (138-208)||(6951317-6951387)
chr5 (285-326)||(2864461-2864502)
chr5 (136-208)||(9818737-9818810)
chr5 (38-86)||(117383-117431)
chr5 (144-208)||(18851100-18851164)
chr5 (146-208)||(22226256-22226318)
chr5 (282-327)||(2937731-2937776)
chr5 (38-88)||(9818868-9818920)
chr5 (38-86)||(35757058-35757106)
chr5 (136-204)||(42858115-42858183)
[»] chr3 (14 HSPs)
chr3 (136-326)||(31708249-31708435)
chr3 (136-318)||(31012914-31013093)
chr3 (138-210)||(31492768-31492839)
chr3 (35-69)||(31708136-31708170)
chr3 (38-89)||(42484399-42484452)
chr3 (187-235)||(24649424-24649472)
chr3 (44-92)||(36550068-36550116)
chr3 (136-208)||(40147860-40147932)
chr3 (247-326)||(14021835-14021913)
chr3 (136-208)||(27266804-27266876)
chr3 (38-87)||(31013167-31013218)
chr3 (146-190)||(32523360-32523404)
chr3 (144-188)||(41596167-41596211)
chr3 (136-184)||(46853544-46853592)
[»] chr4 (17 HSPs)
chr4 (136-214)||(52965864-52965942)
chr4 (135-233)||(38716545-38716636)
chr4 (136-208)||(32818380-32818452)
chr4 (141-190)||(45011895-45011944)
chr4 (144-208)||(8604640-8604704)
chr4 (144-204)||(35065070-35065130)
chr4 (35-92)||(20712712-20712769)
chr4 (145-208)||(1048720-1048783)
chr4 (138-236)||(53655146-53655243)
chr4 (137-190)||(21691223-21691276)
chr4 (138-215)||(44278979-44279056)
chr4 (152-208)||(1616394-1616449)
chr4 (270-326)||(6463888-6463944)
chr4 (136-208)||(26617471-26617543)
chr4 (144-208)||(30357515-30357579)
chr4 (134-198)||(33843990-33844054)
chr4 (285-333)||(53655047-53655095)
[»] chr7 (6 HSPs)
chr7 (136-208)||(41386825-41386897)
chr7 (146-227)||(1442557-1442638)
chr7 (136-208)||(27571865-27571937)
chr7 (136-167)||(32295228-32295259)
chr7 (155-204)||(28725081-28725130)
chr7 (138-182)||(42816480-42816524)
[»] chr2 (8 HSPs)
chr2 (136-210)||(5533041-5533115)
chr2 (145-208)||(42982547-42982610)
chr2 (136-208)||(43501128-43501198)
chr2 (135-236)||(17281383-17281485)
chr2 (146-208)||(42740980-42741042)
chr2 (134-171)||(31415375-31415412)
chr2 (162-208)||(30503212-30503258)
chr2 (136-198)||(33019166-33019228)
[»] chr8 (9 HSPs)
chr8 (136-208)||(4662913-4662985)
chr8 (136-208)||(13384664-13384736)
chr8 (136-208)||(32927895-32927967)
chr8 (134-208)||(35494993-35495067)
chr8 (136-208)||(38868501-38868573)
chr8 (136-207)||(26100156-26100227)
chr8 (136-208)||(15677825-15677898)
chr8 (136-208)||(37684408-37684480)
chr8 (144-208)||(32994260-32994324)
[»] chr6 (10 HSPs)
chr6 (149-236)||(10669486-10669573)
chr6 (144-208)||(4910911-4910975)
chr6 (138-209)||(6654102-6654173)
chr6 (136-191)||(46298-46355)
chr6 (136-208)||(1485156-1485228)
chr6 (144-208)||(7952727-7952791)
chr6 (136-188)||(17225875-17225927)
chr6 (136-208)||(25195853-25195925)
chr6 (162-208)||(765422-765468)
chr6 (136-184)||(34027427-34027475)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 40662870 - 40663233
Alignment:
Q  18 ggtcatatgtggttgcatttagtgtatgtttggttctgctttgacaagaattaatt--gagtgaattgattctgacttatagttagttgcnnnnnnn-gt 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||        ||    
T  40662870 ggtcatatgtggttgcatttagtgtatgtttggttctgttttgacaagaattaattttgagtgaattgattctgacttatagttagttgcaaaaaaaagt 40662969  T
Q  115 gatttgtgtttgggtacattaagttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40662970 gatttgtgtttgggtacattaagttgaattataaatttgtgtgtta--atcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttt 40663067  T
Q  215 tagtctacaaaattgatttctcnnnnnnntgtcaaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttaaggcatctaaaagt 314  Q
    ||||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40663068 tagtctataaaattgatttctcaaaaaaatgtcaaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttatggcatctaaaagt 40663167  T
Q  315 gaaaccaaacaccctcttaatccatttccatcatctcaaactattacgagcgttcatttgtctctg 380  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40663168 gaaaacaaacaccctcttaatccatttccatcatctcaaactattacgagcgtccatttgtctctg 40663233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 136 - 263
Target Start/End: Complemental strand, 34915141 - 34915014
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttct 235  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||||||||| | |||||| || |||||||  ||||||||  ||||||||||||||    
T  34915141 agttgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacaaagaatagcttcaactagaatttcttttagtcctcaaaattgatttct 34915042  T
Q  236 cnnnnnnntgtcaaatataattttatag 263  Q
    |       ||||||| ||||||||||||    
T  34915041 caaaatcatgtcaaacataattttatag 34915014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 3515916 - 3515821
Alignment:
Q  113 gtgatttgtgtttgggtacattaagttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||||||||| |||||| |||||||| |||| |||| |||| | |||||||||| |||| ||||||||||| | ||||||| |||||||||    
T  3515916 gtgatttgtgtttggatacatttagttgaatgataattttgagtgtaaaaatcaattctagaatgaaaagctacaatttctagcttcaagtagaat 3515821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 16556555 - 16556456
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttct 235  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||||| |  ||||| ||| ||  ||| || ||||||||||||| ||||| ||||||||    
T  16556555 agttgaattatgaatttgtgtgtcagaatcaattctagaatcaaaagttgtaaatagtagtttcgagtcgagttgtttttagtctccaaaactgatttct 16556456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 138 - 321
Target Start/End: Original strand, 28267921 - 28268100
Alignment:
Q  138 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttctcn 237  Q
    ||||||||||||||| || |||| ||| |||||| |||||| || ||||||| | || ||  ||||||||||  ||||||||| ||||||||||||||      
T  28267921 ttgaattataaatttatgcgttaaaattaattctagaatcataaactacaaa-agtacct--aagtagaattccttttagtctccaaaattgatttct-a 28268016  T
Q  238 nnnnnntgtcaaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttaaggcatctaaaagtgaaacca 321  Q
          || |||| | |||||||| ||||   |||||||||||||| ||||||| ||||| |||| ||||||||||||||||||    
T  28268017 aaaaaatgccaaacaaaattttatggagttagaattgcttttgacacttgaaaaacacttctaagacatctaaaagtgaaacca 28268100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 11049323 - 11049253
Alignment:
Q  138 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||| ||||||||||||||| | |||||||| | |||||||||||||||||| ||||||| |||||||||    
T  11049323 ttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaat 11049253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 51500080 - 51500134
Alignment:
Q  44 tgtttggttctgctttgacaagaattaattgagtgaattgattctgacttatagt 98  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  51500080 tgtttggttctgcgttgacaagaattaattgagtgaattgattttgactaatagt 51500134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 47899330 - 47899231
Alignment:
Q  134 taagttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgattt 233  Q
    |||||||||| |||| ||||||| |||  ||||| |||  ||| |||| ||||||||| ||||||  |||||||||||||||||||  ||||||||||||    
T  47899330 taagttgaatcataagtttgtgtttta--atcaaatctaaaataaaaaactacaaatagtagcttctagtagaattgtttttagtcctcaaaattgattt 47899233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 7524188 - 7524120
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagta 204  Q
    ||||||| ||||||||||||||| | ||||||||||  ||||||||||||||||| ||| ||| |||||    
T  7524188 agttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaaatcctaacttcaagta 7524120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 28287346 - 28287417
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaa 207  Q
    |||||||  ||||||||| |||||| ||||||||||  ||||||||||||||||| || |||| ||||||||    
T  28287346 agttgaacaataaatttgagtgttaaaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaa 28287417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 28083909 - 28083970
Alignment:
Q  147 aaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    |||||||||||| | ||| |||| | |||||||||||||||||| ||||||| |||||||||    
T  28083909 aaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtagaat 28083970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 30557577 - 30557507
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||| ||||||||||||||  | |||||||||| ||||||||| |||||||| ||||||| || ||||||    
T  30557577 agttgaactataaatttgtgtg--aaaatcaattctagaatcaaaaactacaaatcctagcttcaactagaat 30557507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 36660503 - 36660556
Alignment:
Q  146 taaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagcttt 199  Q
    ||||||||||||||||| |||||| | ||||||||||||| ||||| |||||||    
T  36660503 taaatttgtgtgttagattcaattttagaatcaaaagctagaaatagtagcttt 36660556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 47892417 - 47892470
Alignment:
Q  155 gtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    |||||| |||||||||| |||||||||||| ||| | |||||||||||||||||    
T  47892417 gtgttaaaatcaattctagaatcaaaagcttcaatttctagctttaagtagaat 47892470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 1514418 - 1514346
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    |||||||  |||||||||||||| | |||||||| |  ||| ||||||||||||| ||||||| |||||||||    
T  1514418 agttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagtagaat 1514346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 30850409 - 30850481
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||| ||||||||||| ||||| ||||||||||  ||| |||| |||||||| |||| || |||||||||    
T  30850409 agttgaactataaatttgtatgttaaaatcaattctaaaattaaaaactacaaatcctagtttcaagtagaat 30850481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 2555976 - 2555941
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattct 171  Q
    ||||||||||||||||||| ||||||||||||||||    
T  2555976 agttgaattataaatttgtatgttagaatcaattct 2555941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 52059337 - 52059303
Alignment:
Q  201 agtagaattgtttttagtctacaaaattgatttct 235  Q
    |||||||||||||||||||| ||||||||||||||    
T  52059337 agtagaattgtttttagtctccaaaattgatttct 52059303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 51500870 - 51500915
Alignment:
Q  162 aatcaattcttgaatcaaaagctacaaatactagctttaagtagaa 207  Q
    |||||||||| |||||||||||||||||| |||| || ||||||||    
T  51500870 aatcaattctagaatcaaaagctacaaatcctaggttcaagtagaa 51500915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 136 - 326
Target Start/End: Complemental strand, 15368448 - 15368259
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttct 235  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| ||||| || |||||| ||||||||||| |||||||   ||||||||||||||    
T  15368448 agttgaattataaatttgtgtgttagaatcaattctataatcaaaagttacaactagtagcttcaagtagaattgcttttagttcccaaaattgatttct 15368349  T
Q  236 cnnnnnnntgtcaaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttaaggcatctaaaagtgaaaccaaacac 326  Q
    |       || || | |||||||||||||||  | |||||||||  || ||||||||||||| || | |||||| ||||||||||||||||    
T  15368348 cgataaaatgccatacataattttatagagt-aagattgcttttagcacttgaaaagcacttctaggacatctagaagtgaaaccaaacac 15368259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 2937600 - 2937689
Alignment:
Q  144 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgattt 233  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||||| |||||||||||||||||  |||||||   ||||||||||||    
T  2937600 tataaatttgtgtgttataatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaaattgattt 2937689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 29822054 - 29821954
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttga----atcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgat 231  Q
    |||||||| |||||||||| ||||||||||||||  | |    ||||||| ||||||||| |||||| || |||||||||||||| ||| ||||||||||    
T  29822054 agttgaatgataaatttgtatgttagaatcaattaattataaaatcaaaaactacaaataatagcttcaaatagaattgtttttaatctccaaaattgat 29821955  T
Q  232 t 232  Q
    |    
T  29821954 t 29821954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 6951317 - 6951387
Alignment:
Q  138 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||||||||| |||||   |||||||| | |||||||||||||||||| ||| ||| |||||||||    
T  6951317 ttgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaat 6951387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 2864502 - 2864461
Alignment:
Q  285 ttgaaaagcacttttaaggcatctaaaagtgaaaccaaacac 326  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  2864502 ttgaaaagcacttctaaagcatctaaaagtgaaaccaaacac 2864461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 9818810 - 9818737
Alignment:
Q  136 agttgaattataaatttgtgtgttagaa-tcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||| ||||||||||||| | | || |||||||| ||||||||||||||||||  |||||| |||||||||    
T  9818810 agttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 9818737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 117383 - 117431
Alignment:
Q  38 agtgtatgtttggttctgctttgacaagaattaattgagtgaattgatt 86  Q
    ||||||||||||||||||  ||||||| |||| ||||||||||||||||    
T  117383 agtgtatgtttggttctgtgttgacaaaaattgattgagtgaattgatt 117431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 18851100 - 18851164
Alignment:
Q  144 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||| ||||||| | ||||||||||  |||||||||||||||||  |||||| |||||||||    
T  18851100 tataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 18851164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 22226256 - 22226318
Alignment:
Q  146 taaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||||||| | | | ||||||  ||||||||||||||||||||| ||| |||||||||    
T  22226256 taaatttgtgtgtaaaagttaattctaaaatcaaaagctacaaatactatcttcaagtagaat 22226318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 2937731 - 2937776
Alignment:
Q  282 catttgaaaagcacttttaaggcatctaaaagtgaaaccaaacacc 327  Q
    |||||||||||||||| || ||||||||||  ||||||||||||||    
T  2937731 catttgaaaagcacttctatggcatctaaacatgaaaccaaacacc 2937776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 9818920 - 9818868
Alignment:
Q  38 agtgtatgtttggttctgctttgacaagaattaa--ttgagtgaattgattct 88  Q
    |||||||||||||||||||  ||||||||||| |  |||||||||||||||||    
T  9818920 agtgtatgtttggttctgcggtgacaagaatttattttgagtgaattgattct 9818868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 35757058 - 35757106
Alignment:
Q  38 agtgtatgtttggttctgctttgacaagaattaattgagtgaattgatt 86  Q
    |||||||||||||||||   ||||||| |||| ||||||||||||||||    
T  35757058 agtgtatgtttggttctatattgacaaaaattgattgagtgaattgatt 35757106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 42858183 - 42858115
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagta 204  Q
    ||||||| ||||||||||||||| | |||||||| | |||| ||||||| ||||| ||| ||| |||||    
T  42858183 agttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaacttcaagta 42858115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 136 - 326
Target Start/End: Original strand, 31708249 - 31708435
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttct 235  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||  |||| ||||| ||||||||  | |||||||||| |    
T  31708249 agttgaattataaatttgtgtgttagaatcaattctagaatcaaaagctacaaatagtagcttcgagtataattgcttttagtcctcgaaattgatttat 31708348  T
Q  236 cnnnnnnntgtcaaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttaaggcatctaaaagtgaaaccaaacac 326  Q
    |       || |||| ||||||   || |||   | ||||||||| || ||||||||||||| | ||||||||||||||||||| ||||||    
T  31708349 c-aaaaaatgccaaacataatt---tatagttagagttgcttttggcacttgaaaagcacttattaggcatctaaaagtgaaacaaaacac 31708435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 136 - 318
Target Start/End: Complemental strand, 31013093 - 31012914
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttct 235  Q
    ||||||||| |||||||||||||||||||||||||| || ||||| |||||||||| ||| || ||||||||||| ||||||||  |||||||||||| |    
T  31013093 agttgaattctaaatttgtgtgttagaatcaattctagattcaaaggctacaaatagtaggttcaagtagaattgcttttagtccccaaaattgatttat 31012994  T
Q  236 cnnnnnnntgtcaaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttaaggcatctaaaagtgaaa 318  Q
            || |||| |||| |||||||||| | | ||||||||| || ||||||||||||| ||||||||||| ||||||||    
T  31012993 -tgaaaaatgccaaacataa-tttatagagt-tgagttgcttttggcacttgaaaagcacttataaggcatctagaagtgaaa 31012914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 31492839 - 31492768
Alignment:
Q  138 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattg 210  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| | |||| || ||||||||    
T  31492839 ttgaattataaatttgtgtgtta-aatcaattctagaatcaaaagctacaaatagttgcttcaaatagaattg 31492768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 31708136 - 31708170
Alignment:
Q  35 tttagtgtatgtttggttctgctttgacaagaatt 69  Q
    |||||||||||||||||||||||||||||||||||    
T  31708136 tttagtgtatgtttggttctgctttgacaagaatt 31708170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 42484399 - 42484452
Alignment:
Q  38 agtgtatgtttggttctgctttgacaagaattaat--tgagtgaattgattctg 89  Q
    |||||||||||  ||||||||||||||||||||||  |||||||||||||||||    
T  42484399 agtgtatgtttacttctgctttgacaagaattaattatgagtgaattgattctg 42484452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 24649424 - 24649472
Alignment:
Q  187 aaatactagctttaagtagaattgtttttagtctacaaaattgatttct 235  Q
    ||||| || ||||||||| |||||||||||||||||||||||| |||||    
T  24649424 aaataataactttaagtaaaattgtttttagtctacaaaattgttttct 24649472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 36550068 - 36550116
Alignment:
Q  44 tgtttggttctgctttgacaagaattaattgagtgaattgattctgact 92  Q
    ||||||| ||||| |||||||||||| |||||||||||||||| |||||    
T  36550068 tgtttggatctgcattgacaagaattgattgagtgaattgattttgact 36550116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 40147860 - 40147932
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    |||||||| |||||||   |||||  |||||||||| |||||||||||| ||||| ||||||| |||||||||    
T  40147860 agttgaatgataaattcaagtgttgaaatcaattctagaatcaaaagctccaaattctagcttgaagtagaat 40147932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 14021913 - 14021835
Alignment:
Q  247 caaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttaaggcatctaaaagtgaaaccaaacac 326  Q
    |||| |||||||||| ||||   ||||||||||| || ||||||| ||||| |||| |||||| ||||||||||||||||    
T  14021913 caaacataattttatggagttagaattgcttttgtcacttgaaaaacacttctaag-catctagaagtgaaaccaaacac 14021835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 27266804 - 27266876
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    |||||||  ||||||||| |||| | ||| |||||||||||||  |||||||| | ||||||| |||||||||    
T  27266804 agttgaacaataaatttgagtgtaaaaattaattcttgaatcattagctacaatttctagcttcaagtagaat 27266876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 31013218 - 31013167
Alignment:
Q  38 agtgtatgtttggttctgctttgacaagaattaa--ttgagtgaattgattc 87  Q
    ||||||| ||||||||||||||| |||||||| |  ||||||||||||||||    
T  31013218 agtgtatatttggttctgctttggcaagaattgattttgagtgaattgattc 31013167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 32523360 - 32523404
Alignment:
Q  146 taaatttgtgtgttagaatcaattcttgaatcaaaagctacaaat 190  Q
    ||||||||||||| | |||||||| | ||||||||||||||||||    
T  32523360 taaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaat 32523404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 41596167 - 41596211
Alignment:
Q  144 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaa 188  Q
    |||||| |||||||| | ||||||||||| |||||||||||||||    
T  41596167 tataaacttgtgtgtaaaaatcaattctttaatcaaaagctacaa 41596211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 46853544 - 46853592
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagct 184  Q
    |||||||  ||||||||| |||||| |||||||||| ||||||||||||    
T  46853544 agttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagct 46853592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 52965864 - 52965942
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttt 214  Q
    ||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||| || ||| ||||||||| |||||    
T  52965864 agttgaattataaatttatgtgttagaatcaattttagaatcaaaagctataaatagtaacttcaagtagaatcgtttt 52965942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 38716636 - 38716545
Alignment:
Q  135 aagttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgattt 233  Q
    ||||||||||||||||||||  |||||||||||       ||||||||||||||||| |||||| || |||||||||||||| ||| ||||||||||||    
T  38716636 aagttgaattataaatttgtaagttagaatcaa-------atcaaaagctacaaatagtagcttcaactagaattgtttttaatctccaaaattgattt 38716545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 32818380 - 32818452
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||| ||||||||||||||  | |||||||||| |||||||||||||||||| ||||||| || ||||||    
T  32818380 agttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaat 32818452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 45011944 - 45011895
Alignment:
Q  141 aattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaat 190  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||    
T  45011944 aattataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaat 45011895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 8604640 - 8604704
Alignment:
Q  144 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||||||||| | |||||||||| ||||| ||||||||||||  |||||| |||||||||    
T  8604640 tataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagtagaat 8604704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 35065130 - 35065070
Alignment:
Q  144 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagta 204  Q
    ||||||||||||||| | |||||||||| ||||||||||  |||||||||||||| |||||    
T  35065130 tataaatttgtgtgtaaaaatcaattctagaatcaaaagtcacaaatactagcttcaagta 35065070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 20712712 - 20712769
Alignment:
Q  35 tttagtgtatgtttggttctgctttgacaagaattaattgagtgaattgattctgact 92  Q
    |||||| |||||||||||||||| ||| |||||||  |||||||||||||||| ||||    
T  20712712 tttagtttatgtttggttctgctgtgataagaattggttgagtgaattgattccgact 20712769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 1048783 - 1048720
Alignment:
Q  145 ataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||| |||| |||||||||| | |||| |||||||| |||| ||| |||||||||||||    
T  1048783 ataaatttgagtgtaagaatcaattatagaattaaaagctataaattctaactttaagtagaat 1048720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 53655243 - 53655146
Alignment:
Q  138 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttctc 236  Q
    ||||| ||||||||||||||||| |||  ||| |  |||| ||| ||  ||||| |||||| |||||||| |||||||||||| | |||||||||||||    
T  53655243 ttgaactataaatttgtgtgttaaaattgattttaaaatccaaatctttaaataatagcttcaagtagaaatgtttttagtcttc-aaattgatttctc 53655146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 21691223 - 21691276
Alignment:
Q  137 gttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaat 190  Q
    |||||| ||||||||||||||| | ||||||||||  || ||||||||||||||    
T  21691223 gttgaactataaatttgtgtgtgaaaatcaattctacaaccaaaagctacaaat 21691276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 44278979 - 44279056
Alignment:
Q  138 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgttttt 215  Q
    |||||||| |||||| |||||||||||||||| |  ||| ||||| |||| ||| ||| || ||||||||||| ||||    
T  44278979 ttgaattaaaaatttatgtgttagaatcaattttaaaataaaaagatacatatagtagtttcaagtagaattgatttt 44279056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 1616449 - 1616394
Alignment:
Q  152 tgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    |||||||  ||||||||||| ||||||||||||||||||  |||| |||||||||||    
T  1616449 tgtgtgtgggaatcaattctagaatcaaaagctacaaattgtagc-ttaagtagaat 1616394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 6463944 - 6463888
Alignment:
Q  270 aattgcttttgacatttgaaaagcacttttaaggcatctaaaagtgaaaccaaacac 326  Q
    ||||| ||||| || ||||||||||||| | |||||| |||||||||||| ||||||    
T  6463944 aattgtttttgccaattgaaaagcacttctgaggcatttaaaagtgaaacaaaacac 6463888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 26617543 - 26617471
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||||||||||| | | | | |||||||| |  |||||||||||||| || ||||||| |||||||||    
T  26617543 agttgaattataaatttatctataaaaatcaattttataatcaaaagctacagattctagcttcaagtagaat 26617471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 30357579 - 30357515
Alignment:
Q  144 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||||||||| | |||||||| |  |||||||||||||||||   ||||| |||||||||    
T  30357579 tataaatttgtgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaat 30357515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 33844054 - 33843990
Alignment:
Q  134 taagttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctt 198  Q
    |||||||||  ||||||||| |||||| |||||||| | |||||||||||| ||| | |||||||    
T  33844054 taagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaatttctagctt 33843990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 53655095 - 53655047
Alignment:
Q  285 ttgaaaagcacttttaaggcatctaaaagtgaaaccaaacaccctctta 333  Q
    ||||||| ||||| |||| ||||||| |||||||||||||| |||||||    
T  53655095 ttgaaaaacacttataagacatctaagagtgaaaccaaacatcctctta 53655047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 41386825 - 41386897
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||||||||||||||||| |  ||||||||| |||| ||||||||||||| ||||||| |||||||||    
T  41386825 agttgaattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaat 41386897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 1442638 - 1442557
Alignment:
Q  146 taaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaat 227  Q
    ||||||||||| |||||||||||| | ||||||||||||| | ||| || ||| ||||||||||| ||||||| | ||||||    
T  1442638 taaatttgtgttttagaatcaattatagaatcaaaagctatacataataacttcaagtagaattgcttttagtatccaaaat 1442557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 27571937 - 27571865
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    |||||||| ||||| ||| |||||| |||||||||| |||||||||||| ||| | ||| ||| |||||||||    
T  27571937 agttgaataataaacttgagtgttaaaatcaattctagaatcaaaagctccaatttctaacttcaagtagaat 27571865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 167
Target Start/End: Complemental strand, 32295259 - 32295228
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaa 167  Q
    ||||||||||||||||||||||||||||||||    
T  32295259 agttgaattataaatttgtgtgttagaatcaa 32295228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 28725081 - 28725130
Alignment:
Q  155 gtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagta 204  Q
    |||| |||||||||| | |||||||||||||||||| ||||||| |||||    
T  28725081 gtgtgagaatcaattatagaatcaaaagctacaaattctagcttcaagta 28725130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 42816480 - 42816524
Alignment:
Q  138 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaag 182  Q
    ||||||||||||||||||||| | |||||||||| |||| |||||    
T  42816480 ttgaattataaatttgtgtgtgaaaatcaattctagaattaaaag 42816524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 5533041 - 5533115
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattg 210  Q
    ||||||||||||||||| ||||||  ||||||||   ||||||||||||||||||| |||||| |||||||||||    
T  5533041 agttgaattataaatttatgtgtttaaatcaatttaagaatcaaaagctacaaatagtagcttcaagtagaattg 5533115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 42982610 - 42982547
Alignment:
Q  145 ataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    |||||||||||||| | |||||||||| |||||||||||||||| | ||||||| |||||||||    
T  42982610 ataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttcaagtagaat 42982547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 43501198 - 43501128
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||||||| |||||||  |||||||||||||  ||||||||||||||||| |||| || |||||||||    
T  43501198 agttgaattataattttgtgt--tagaatcaattctaaaatcaaaagctacaaatcctagtttcaagtagaat 43501128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 17281485 - 17281383
Alignment:
Q  135 aagttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagt-ctacaaaattgattt 233  Q
    ||||| |||||||||||||||| ||| |||||||| |  |||  ||||||||| ||| |||||| ||||| ||||||||| ||| ||  |||||||||||    
T  17281485 aagttcaattataaatttgtgtattaaaatcaattttaaaattgaaagctacagatagtagcttcaagtataattgttttaagtcctcaaaaattgattt 17281386  T
Q  234 ctc 236  Q
    |||    
T  17281385 ctc 17281383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 42741042 - 42740980
Alignment:
Q  146 taaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    |||||||| |||| | |||||||||| ||||||||||||||||||  |||||| |||||||||    
T  42741042 taaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagtagaat 42740980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 31415412 - 31415375
Alignment:
Q  134 taagttgaattataaatttgtgtgttagaatcaattct 171  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  31415412 taagttgaattataaatttgtgtgtaagaatcaattct 31415375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 30503258 - 30503212
Alignment:
Q  162 aatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||||||||||||||||||| ||| || |||| |||||||||    
T  30503258 aatcaattcttgaatcaaaagctacgaatcctggcttcaagtagaat 30503212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 33019166 - 33019228
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctt 198  Q
    ||||||| ||||||||| ||||| | ||||||||||  || |||||||||||||| |||||||    
T  33019166 agttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagctt 33019228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 4662913 - 4662985
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||| |||| |||||||||| | |||||||||| ||| |||||||||||||| ||||||| |||||||||    
T  4662913 agttgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatcctagcttcaagtagaat 4662985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 13384664 - 13384736
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||| ||||||||||||||| | |||||||||| ||||||||||||||||||  |||||| || ||||||    
T  13384664 agttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaat 13384736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 32927967 - 32927895
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||| ||||||||||||||| | ||| ||||||  ||||||||||||||||| ||||||| |||||||||    
T  32927967 agttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagtagaat 32927895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 35495067 - 35494993
Alignment:
Q  134 taagttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||| |||| |||||||||| | || ||||||| |||||||||||||||||| ||||||| | |||||||    
T  35495067 taagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatcctagcttcatgtagaat 35494993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 38868573 - 38868501
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||| ||||||||||||||| | |||||||| | ||| ||||||||||||||  |||||| |||||||||    
T  38868573 agttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaat 38868501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 26100156 - 26100227
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaa 207  Q
    |||||||  |||||||||||||| | |||||||| | |||||||||||||||||| ||||||| || |||||    
T  26100156 agttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaa 26100227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 15677825 - 15677898
Alignment:
Q  136 agttgaattataaatttgtgtgttagaa-tcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||| ||||||||||||||| | || ||||||||  |||||||||||| |||| ||||||| |||||||||    
T  15677825 agttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaat 15677898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 37684480 - 37684408
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||||||||||| ||  ||| |||||||| | ||||||||||| |||||| ||| ||| |||||||||    
T  37684480 agttgaattataaatttttgcattaaaatcaattttagaatcaaaagccacaaatcctaacttcaagtagaat 37684408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 32994260 - 32994324
Alignment:
Q  144 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||||||| | | |||||||||| || |||||||||| ||||  |||||| |||||||||    
T  32994260 tataaatttgtgtataaaaatcaattctagactcaaaagctagaaatcatagcttcaagtagaat 32994324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 10669486 - 10669573
Alignment:
Q  149 atttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttctc 236  Q
    |||| |||||||||||||||||  |||| |||| ||||||||| || ||| ||||||| || |||||||||| |||||||||| ||||    
T  10669486 atttttgtgttagaatcaattccagaataaaaaactacaaatagtaccttcaagtagatttatttttagtctccaaaattgatctctc 10669573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 4910975 - 4910911
Alignment:
Q  144 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||||| ||| | |||||||||| ||||||||||||||||||  |||||| |||||||||    
T  4910975 tataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 4910911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 6654102 - 6654173
Alignment:
Q  138 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaatt 209  Q
    ||||| ||||||||| ||||| | |||||| ||| |||| ||||||||||||| ||||||| ||||||||||    
T  6654102 ttgaactataaatttctgtgtgaaaatcaaatctagaattaaaagctacaaatcctagcttcaagtagaatt 6654173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 46298 - 46355
Alignment:
Q  136 agttgaattataaa--tttgtgtgttagaatcaattcttgaatcaaaagctacaaata 191  Q
    ||||||||||||||  ||||| |||||||||| ||||| |||||||||||||||||||    
T  46298 agttgaattataaaaatttgtttgttagaatctattctagaatcaaaagctacaaata 46355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 1485156 - 1485228
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    |||||||  ||||||||| |||||| |||||||||| |||||||||||| ||| | |||| || |||||||||    
T  1485156 agttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctccaatttctagattcaagtagaat 1485228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 7952727 - 7952791
Alignment:
Q  144 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||||||||||| | |  ||||||| |||||||||||||||||| || |||| |||||||||    
T  7952727 tataaatttgtgtgtgaaacccaattctagaatcaaaagctacaaatcctcgcttcaagtagaat 7952791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 17225927 - 17225875
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaa 188  Q
    ||||||| ||||||||||| ||| | |||||||||| ||||||||||||||||    
T  17225927 agttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctacaa 17225875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 25195925 - 25195853
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    ||||||| |||||||||||||||   | |||||||| ||||||||||||| |||| |||| ||||| ||||||    
T  25195925 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagttttaattagaat 25195853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 765422 - 765468
Alignment:
Q  162 aatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 208  Q
    |||||||||| ||||||||||||||||||  |||||| |||||||||    
T  765422 aatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 765468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 34027427 - 34027475
Alignment:
Q  136 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagct 184  Q
    |||||||| ||||||||| |||| | |||||||||| ||||||||||||    
T  34027427 agttgaataataaatttgagtgtaaaaatcaattctagaatcaaaagct 34027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University