View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10494_low_6 (Length: 357)
Name: NF10494_low_6
Description: NF10494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10494_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 6264457 - 6264126
Alignment:
| Q |
13 |
agttaacacattgtgaaacatcgatatacttcagtcgagtcatgtcacagacgctaggaggaagtgtttttaataccggacacgcgtataaccggagtat |
112 |
Q |
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| T |
6264457 |
agttaacacattgtgaaacatcgatatacttcagtcgagtcatgtcacagacgctaggaggaagtgtttttaataccggacacgcgtataaccggagtat |
6264358 |
T |
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| Q |
113 |
ctctagagatcttagcgcgcctaattcaacaggaagttgttccaaattgtgacattcggtgagactcaagttttggagtgattgtatcctacaaatgctt |
212 |
Q |
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| T |
6264357 |
ctctagagatcttagcgcgcctaattcaacaggaagttgttccaaattgtgacattcggtgagactcaagttttggagtgattgtatcctacaaatgctt |
6264258 |
T |
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| Q |
213 |
gagggtaaagaagttacatcatcacaatgatcaagagtgatctcagagaggttaggaaagatttgagacagatttacctctttaccctctagattgttat |
312 |
Q |
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| T |
6264257 |
gagggtaaagaagttacatcatcacaatgatcaagagtgatctcagagaggttaggaaagatttgagacagatttacctctttaccctctagattgttat |
6264158 |
T |
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| Q |
313 |
taatcttacatgaaactataaataacttgcct |
344 |
Q |
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| T |
6264157 |
taatcttacatgaaactataaataacttgcct |
6264126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 6273106 - 6272849
Alignment:
| Q |
17 |
aacacattgtgaaacatcgatatacttcagtcgagtcatgtcacagacgctaggaggaagtgtttttaataccggacacgcgtataaccggagtatctct |
116 |
Q |
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| T |
6273106 |
aacacattgagaaatgtcgatatacttcaatctagtcattccacagatgctaggaggaagtgttctcaaatttggacaagcatataaccgtagaatctct |
6273007 |
T |
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| Q |
117 |
agagatcttagcgcgcctaattcaacaggaagttgttccaaattgtgacattcggtgagactcaagttttggagtgattgtatcctacaaatgcttgagg |
216 |
Q |
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| T |
6273006 |
agatatcttagtgagcctaattcaataggtaatcgtgttaaactatgacagttagtaagactcaagttttgtagtgactgtatcctgcaaatgcttgaag |
6272907 |
T |
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| Q |
217 |
gtaaagaagttacatcatcacaatgatcaagagtgatctcagagaggttaggaaagat |
274 |
Q |
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|||| |||||||| ||||| |||||||| |||| ||| |||| |||||| ||||| |
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| T |
6272906 |
gtaactcggttacatcctcacagtgatcaagcgtgagctctgagatgttagggaagat |
6272849 |
T |
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