View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10494_low_9 (Length: 293)
Name: NF10494_low_9
Description: NF10494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10494_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 45217793 - 45218058
Alignment:
| Q |
12 |
gcaaaggtagagaagccatacttgagtacctgtgttcaaaatctagcgaaaccgcagatttgtttcctctttttgccatagttctttctcttttgtgtgc |
111 |
Q |
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| T |
45217793 |
gcaaaggtagagaagccatacttgagtacctgtgttcaaaatctagcgaaaccgcagatttgtttcctctttttgccatagttctttctcttttgtgtgc |
45217892 |
T |
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| Q |
112 |
attttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgcatgagaaaacccttggctctaattcattaccatgatttgattcc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45217893 |
attttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgcatgagaaaatccttggctctaattcattaccatgatttgattcc |
45217992 |
T |
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| Q |
212 |
gatgatgagttcatcgacatggacggttctgtatcgaaacagtttatgagattgagttcttgtttt |
277 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217993 |
gatgatgaattcatcgacatggacggttctgtatcgaaacagtttatgagattgagttcttgtttt |
45218058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 687073 - 687173
Alignment:
| Q |
77 |
cctctttttgccatagttctttctcttttgtgtgcattttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgcatgagaaaa |
176 |
Q |
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| T |
687073 |
cctcttctcgccaaagttctttcgcgcttgtgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcagtagttgcatgaaaaaa |
687172 |
T |
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| Q |
177 |
c |
177 |
Q |
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| T |
687173 |
c |
687173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 704440 - 704540
Alignment:
| Q |
77 |
cctctttttgccatagttctttctcttttgtgtgcattttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgcatgagaaaa |
176 |
Q |
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| T |
704440 |
cctcttctcgccaaagttctttcgcgcttgtgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcagtagttgcatgaaaaaa |
704539 |
T |
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| Q |
177 |
c |
177 |
Q |
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| T |
704540 |
c |
704540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 53465371 - 53465301
Alignment:
| Q |
104 |
ttgtgtgcattttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgcatgagaa |
174 |
Q |
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| T |
53465371 |
ttgtgagcattttggtgtcctcccaaagcttgagagctataaaactttctttgacaatagttgcatgagaa |
53465301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 33032544 - 33032649
Alignment:
| Q |
78 |
ctctttttgccatagttctttctcttttgtgtgcattttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgcatgagaaaac |
177 |
Q |
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| T |
33032544 |
ctctttttgctaatgttctttctcttttatgtgcattttggtgtccaccaagagcttgagaactgaaaaactttctctgacagtaattgcatgagaaaac |
33032643 |
T |
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| Q |
178 |
ccttgg |
183 |
Q |
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||||| |
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| T |
33032644 |
tcttgg |
33032649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 2867117 - 2867206
Alignment:
| Q |
76 |
tcctctttttgccatagttctttctcttttgtgtgcattttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagtt |
165 |
Q |
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| T |
2867117 |
tcctctttttgctattgatctctctcttttgtgagcattttggtgtccacctaatgcttgtgagctatagaattttctatgacaatagtt |
2867206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 29335318 - 29335361
Alignment:
| Q |
92 |
gttctttctcttttgtgtgcattttggtgtccaccaagtgcctg |
135 |
Q |
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| T |
29335318 |
gttctttctctcttgtgtgcattttgatgaccaccaagtgcctg |
29335361 |
T |
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