View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10495_high_1 (Length: 445)

Name: NF10495_high_1
Description: NF10495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10495_high_1
NF10495_high_1
[»] chr3 (1 HSPs)
chr3 (1-426)||(46750701-46751134)
[»] chr5 (1 HSPs)
chr5 (339-426)||(32684131-32684218)
[»] chr1 (2 HSPs)
chr1 (334-408)||(38831873-38831947)
chr1 (357-402)||(38707904-38707949)
[»] chr7 (3 HSPs)
chr7 (334-394)||(34993148-34993208)
chr7 (334-394)||(12810167-12810227)
chr7 (376-408)||(40059020-40059052)
[»] chr2 (2 HSPs)
chr2 (320-408)||(42784042-42784130)
chr2 (333-394)||(41436358-41436419)
[»] chr4 (1 HSPs)
chr4 (321-404)||(7117382-7117465)


Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 46750701 - 46751134
Alignment:
Q  1 attcatggaacccatgaaggtaaggttacaaaatgatagtgacatatttgtacgtaaacaccaacacgttctcaacaggcttaacgattatgaaagctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46750701 attcatggaacccatgaaggtaaggttacaaaatgatagtgacatatttgtacgtaaacaccaacacgttctcaacaggcttaacgattatgaaagctct 46750800  T
Q  101 ataacaccaacaaaaaggaagagcagggaaaatcacatttacatcatt--------attatacaatttcagttttagttttaatttacaaaaattgacac 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||||||||||||||||||||||    
T  46750801 ataacaccaacaaaaaggaagagcagggaaaatcacatttacatcattattatacaattatacaatttcaattttagttttaatttacaaaaattgacac 46750900  T
Q  193 cagacaaagggaaatctatgtagtcaaagatacaatattgatcatatgaattgcaggccctacactgctacaaattatggagt-nnnnnnnnngatatcg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||    
T  46750901 cagacaaagggaaatctatgtagtcaaagatacaatattgatcatatgaattgcaggccctacactgctacaaattatggagtaaaaaaaaaaaatatcg 46751000  T
Q  292 ttaacaagtgtctaacggtattatttaagattctattaaatgaaattttgtcttaaaagtataacttgttatttttgtcaaaacaataattacacaactt 391  Q
    |||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46751001 ttaacaagtgtctaac-gtattgtttaacattcaattaaatgaaattttgtcttaaaagtataacttgttatttttgccaaaacaataattacacaactt 46751099  T
Q  392 tttaacataaatttactctttttaggactttaacc 426  Q
    ||| ||||||||||||||||||||  |||||||||    
T  46751100 ttttacataaatttactctttttaaaactttaacc 46751134  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 426
Target Start/End: Complemental strand, 32684218 - 32684131
Alignment:
Q  339 ttgtcttaaaagtataacttgttatttttgtcaaaacaataattacacaactttttaacataaatttactctttttaggactttaacc 426  Q
    |||||| |||| || || |||||| ||||||||| |||||||||| |||| ||||||||||||| ||| | ||||||| | |||||||    
T  32684218 ttgtctaaaaaatacaagttgttaattttgtcaacacaataattatacaagtttttaacataaacttattatttttagtaatttaacc 32684131  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 408
Target Start/End: Original strand, 38831873 - 38831947
Alignment:
Q  334 aaattttgtcttaaaagtataacttgttatttttgtcaaaacaataattacacaactttttaacataaatttact 408  Q
    ||||||| |||||||| || || |||||| |||| || ||  ||||||||||||| |||||||||||||||||||    
T  38831873 aaattttctcttaaaaatacaaattgttacttttatctaagtaataattacacaattttttaacataaatttact 38831947  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 38707949 - 38707904
Alignment:
Q  357 ttgttatttttgtcaaaacaataattacacaactttttaacataaa 402  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||    
T  38707949 ttgttatttttatcaatacaataattacacaactttttaatataaa 38707904  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 34993148 - 34993208
Alignment:
Q  334 aaattttgtcttaaaagtataacttgttatttttgtcaaaacaataattacacaacttttt 394  Q
    |||||||||||||||| |||||  ||||| |||||  |||| |||||||||||||||||||    
T  34993148 aaattttgtcttaaaaatataagatgttacttttgataaaataataattacacaacttttt 34993208  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 12810167 - 12810227
Alignment:
Q  334 aaattttgtcttaaaagtataacttgttatttttgtcaaaacaataattacacaacttttt 394  Q
    |||||||||||||||| |||||  | ||| ||||| ||||  |||||||||||||||||||    
T  12810167 aaattttgtcttaaaaatataagatattacttttgacaaagtaataattacacaacttttt 12810227  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 40059052 - 40059020
Alignment:
Q  376 aataattacacaactttttaacataaatttact 408  Q
    ||||||||||||||||||||| |||||||||||    
T  40059052 aataattacacaactttttaatataaatttact 40059020  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 408
Target Start/End: Original strand, 42784042 - 42784130
Alignment:
Q  320 gattctattaaatgaaattttgtcttaaaagtataacttgttatttttgtcaaaacaataattacacaactttttaacataaatttact 408  Q
    |||| ||||||| |||||||| ||||  || || || |||||  ||| |||||  |||||||||||||||||||||| |||||||||||    
T  42784042 gattatattaaaagaaattttatcttggaaatacaaattgtttctttagtcaatgcaataattacacaactttttaatataaatttact 42784130  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 394
Target Start/End: Complemental strand, 41436419 - 41436358
Alignment:
Q  333 gaaattttgtcttaaaagtataacttgttatttttgtcaaaacaataattacacaacttttt 394  Q
    |||||||| ||||| ||||||||  |||||||||||  |||| ||| |||||||||||||||    
T  41436419 gaaattttatcttagaagtataagatgttatttttgataaaataatgattacacaacttttt 41436358  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 7117465 - 7117382
Alignment:
Q  321 attctattaaatgaaattttgtcttaaaagtataacttgttatttttgtcaaaacaataattacacaactttttaacataaatt 404  Q
    |||| ||||||  ||| |||||||||||| ||||  |||||| ||||||| |  |||| ||||||||||||||||| |||||||    
T  7117465 attccattaaagaaaagtttgtcttaaaaatataggttgttacttttgtcgatgcaatgattacacaactttttaatataaatt 7117382  T

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