View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10495_high_3 (Length: 369)
Name: NF10495_high_3
Description: NF10495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10495_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 41135176 - 41135525
Alignment:
| Q |
1 |
atgttgttgtgttgaaaagtataaaaatatcctttgaattaaatgcacactcgataaaacttattatttaatattaagtttatctaattaacccaatgag |
100 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41135176 |
atgttgttgtgttgaacagtataaaaatatcctttgaattaaatgcacactcgataaaacttattatttaatattaagtttatctaattaacccaatgag |
41135275 |
T |
|
| Q |
101 |
ttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggattttcttaaccagt |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
41135276 |
ttcatctaccttcatgttgcttaagtttttggcttcctcaattgttgtgactttcatgccatacttcttaagtaaagatattaggattttcttaaccagt |
41135375 |
T |
|
| Q |
201 |
ttttcttctgacatcgtttctcccaaggcacagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatcattcattctaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41135376 |
ttttcttctgacatcgtttctcccaaggcacggaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatcattcattctaa |
41135475 |
T |
|
| Q |
301 |
ggttttcatacttggtggtaaggagttggagccttgacatacgcacttta |
350 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41135476 |
ggttttcatacttggtagtaaggagttggagccttgacatacgcacttta |
41135525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 351
Target Start/End: Original strand, 22978989 - 22979209
Alignment:
| Q |
131 |
ggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggattttcttaaccagtttttcttctgacatcgtttctcccaaggca |
230 |
Q |
| |
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|||||||||||| ||||||||||||||| || | ||||| | || ||| | |||||||| ||||||| || || ||||||||| ||||| | || ||| |
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| T |
22978989 |
ggcttcctcaatggttgtgactttcatgtcaaatctcttgggcaaagatgtaaggatttttctaaccagcttctcatctgacatcttttcttctaaagca |
22979088 |
T |
|
| Q |
231 |
cagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatcattcattctaaggttttcatacttggtggtaaggagttgga |
330 |
Q |
| |
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| | ||||||||||| | | |||| |||| ||||| ||||| |||| ||||| ||| ||||| | || || ||| | || || |||||||| | || |
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| T |
22979089 |
cttgatgtattagcaatttcaagaatattcatatgaaattcatgtatggattcataatctttcatcttgagattctcaaatttagtagtaaggagctaga |
22979188 |
T |
|
| Q |
331 |
gccttgacatacgcactttat |
351 |
Q |
| |
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|| ||||||| |||||||||| |
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| T |
22979189 |
gctttgacattcgcactttat |
22979209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 93 - 350
Target Start/End: Original strand, 17402124 - 17402380
Alignment:
| Q |
93 |
ccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggattttct |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | |||||||| |||| || |||||||||| |||| ||||| ||||||||| |||| |||||| |
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| T |
17402124 |
ccaatgagttcatctaccttcatgttgcttatgtcttgggcttccttaattttta-gactttcatgtcatatttcttaagtaaggatcttagaattttcc |
17402222 |
T |
|
| Q |
193 |
taaccagtttttcttctgacatcgtttctcccaaggcacagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatcatt |
292 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| | |||||| |||||| | |||||||||||||||| ||||||||||||||||| ||| |
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|
| T |
17402223 |
taaccagtttttcttttaacatcgtttctcccaaggcacgtgatgtattaacaatatcaaggatactcatgtgaaagttatgaatggtttcatcataatt |
17402322 |
T |
|
| Q |
293 |
cattctaaggttttcatacttggtggtaaggagttggagccttgacatacgcacttta |
350 |
Q |
| |
|
|||||||||||||||| | ||||| |||||||| |||||||||||||||| ||||||| |
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|
| T |
17402323 |
cattctaaggttttcaaaattggtagtaaggagctggagccttgacatacacacttta |
17402380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 23317236 - 23317104
Alignment:
| Q |
91 |
acccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggatttt |
190 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| || | ||||||| ||| |||||||||||||| ||||||||||| |||||||| | |||||||| |
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| T |
23317236 |
acccaatgacttcatttaccttcatgttgcttatgtcttaggcttccgtaatgattgtgactttcatgtcatacttcttgggtaaggatctgaggatttt |
23317137 |
T |
|
| Q |
191 |
cttaaccagtttttcttctgacatcgtttctcc |
223 |
Q |
| |
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|||| |||||||||||||||||| ||||||| |
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| T |
23317136 |
tctaactagtttttcttctgacatcttttctcc |
23317104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 295
Target Start/End: Original strand, 19563594 - 19563798
Alignment:
| Q |
91 |
acccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggatttt |
190 |
Q |
| |
|
||||||| |||||||| |||||||||||||| | || | |||||||||||| ||||||||||||||| || | ||||| || ||||| |||||||| |
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| T |
19563594 |
acccaattagttcatccaccttcatgttgctaatgtcttgggcttcctcaatggttgtgactttcatgtcaaatctcttggacaaagatatgaggatttt |
19563693 |
T |
|
| Q |
191 |
cttaaccagtttttcttctgacatcgtttctcccaaggcacagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatca |
290 |
Q |
| |
|
||||||| || |||| || |||| ||||||| || |||| | ||||||||||| | | |||||| |||||||| ||||| |||| ||||| ||| |
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| T |
19563694 |
tctaaccagcttctcttttggcatcctttctcctaacgcacttcatgtattagcaatgtcaagaatactaatgtgaaaatcatgtatggattcataatct |
19563793 |
T |
|
| Q |
291 |
ttcat |
295 |
Q |
| |
|
||||| |
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|
| T |
19563794 |
ttcat |
19563798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 288
Target Start/End: Complemental strand, 6096047 - 6095850
Alignment:
| Q |
91 |
acccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggatttt |
190 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| || | |||||| ||||| |||||||||||||| || |||||||| ||| ||| | | | |
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| T |
6096047 |
acccaataagttcatccaccttcatgttgcttatgtcttgggcttcttcaatggttgtgactttcatatcaaacttcttgggtagagatctgaaaaaaaa |
6095948 |
T |
|
| Q |
191 |
cttaaccagtttttcttctgacatcgtttctcccaaggcacagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcat |
288 |
Q |
| |
|
|||| ||| || | | | |||||| ||||||||||||||| | ||||||||||||| | ||| ||||||||||| |||||||||| |||||||| |
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|
| T |
6095947 |
tttaatcagcttctttccagacatcctttctcccaaggcacttgatgtattagcaatatcaagaattctcatgtgaaattcatgaatggattcatcat |
6095850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 351
Target Start/End: Original strand, 9296892 - 9297152
Alignment:
| Q |
91 |
acccaatgagttcatctaccttcatgttgcttaagtttctggcttcctcaattgttgtgactttcatgccatacttcttgagtaaggatattaggatttt |
190 |
Q |
| |
|
||||||| |||||||| |||||||||||||| | || | | |||||||||| | ||||||||||||| || | ||||| | || ||| | |||||||| |
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|
| T |
9296892 |
acccaattagttcatccaccttcatgttgctaatgtcttggtcttcctcaatggctgtgactttcatgtcaaatctcttgggcaaagatctgaggatttt |
9296991 |
T |
|
| Q |
191 |
cttaaccagtttttcttctgacatcgtttctcccaaggcacagaaagtattagcaatatttataatactcatgtgaaagtcatgaatggtttcatcatca |
290 |
Q |
| |
|
||||||| || || ||||||||| |||| || || |||| | ||||||||||| | | |||| |||| ||||||||| |||| ||||| ||| |
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|
| T |
9296992 |
tctaaccagcttctcgtctgacatcttttcccctaaagcacttcatgtattagcaatttcaagaatattcatacaaaagtcatgtatggattcatgatct |
9297091 |
T |
|
| Q |
291 |
ttcattctaaggttttcatacttggtggtaaggagttggagccttgacatacgcactttat |
351 |
Q |
| |
|
||||| || || || ||| | || || || |||||||||||| ||||||| |||||||||| |
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|
| T |
9297092 |
ttcatcctgagattctcaaatttagtagtgaggagttggagctttgacattcgcactttat |
9297152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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