View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10496_high_1 (Length: 829)
Name: NF10496_high_1
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 368 - 631
Target Start/End: Complemental strand, 20336736 - 20336482
Alignment:
| Q |
368 |
aactaatgcacattatagtgctagttatgaaaaacattaccttaaattatctcattgaagtaaccttctaggttacctctttgatgataatctttataaa |
467 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20336736 |
aactaatgcacgttatagtgct--ttatgaaaaacagtaccttaaattatctcattgaagtaaccttctaggttacctctttgatgataatctttataaa |
20336639 |
T |
|
| Q |
468 |
attcatcgttgatctcaaaagtaattgtccacatatttcgtgaaggcagttgttgttaagtgcctataggcattcatggatcggtttggtttgttgagtg |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20336638 |
attcatcgttgatctcaaaagtaattgtccacaaatttcgtgaaggcagttgttgttaagtgcctataggcattcatggatcggtttggtttgttgagtg |
20336539 |
T |
|
| Q |
568 |
cctacaggctacaggcatttgtgtggatttctttagggacggctttggtttgcctaactatcac |
631 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20336538 |
ccta-------caggaatttgtgtggatttctttagggacggctttggtttgcctaactatcac |
20336482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 175 - 294
Target Start/End: Complemental strand, 20336929 - 20336810
Alignment:
| Q |
175 |
aatgtccaaatgaccgaaaccagacaagtattttccttctttcatatactttctttgttcaacaaaacaaatataaaatgttaaagagtgtttgtaagac |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20336929 |
aatgtccaaatgaccgaaaccagacaagtattttccttctttcatatactttctttgttcaacaaaacaaatataaaatgttaaagagtgtttgtaagac |
20336830 |
T |
|
| Q |
275 |
acttgagaaaataactattc |
294 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
20336829 |
acttgagaaaataagtattc |
20336810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 20337085 - 20337016
Alignment:
| Q |
19 |
gttttgtctattcattcctcccctcctgagggtctgcaaccgttgttaaggattgatgaattaggatctc |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20337085 |
gttttgtctattcattcctcccctcctgagggtctgcaaccgttgttaaggattgatgaattaggatctc |
20337016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 745 - 814
Target Start/End: Complemental strand, 20336367 - 20336298
Alignment:
| Q |
745 |
gcggcgtaggataagcaatctcaatggggtgtcaatccaattgaaatgtcgatgttttctcttgatgtcc |
814 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
20336367 |
gcggcgtaggataagcaatctcaacggggtgtcaatttaattggaatgtcgatgttttctcttgatgtcc |
20336298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University