View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10496_high_12 (Length: 329)
Name: NF10496_high_12
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 2131296 - 2131576
Alignment:
| Q |
1 |
tatagagttgtctggttatggaaatacatgactcaattcaaaatattatagactctttttctaaactatcattaattcactagattcctctaaacatcgt |
100 |
Q |
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| T |
2131296 |
tatagagttgtctggttatggaaatacatgactcaattcaaaatattatagactctttttctagactattagtaattcactagattcctctaaacatcct |
2131395 |
T |
|
| Q |
101 |
aagctaaaatgacnnnnnnnnn-ctctttaaaacactaaaatacatgatatatgataaagagtcacgacaaccctaaacttaaagtatcgcttgtcctca |
199 |
Q |
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| T |
2131396 |
aagctaaaatgacaaaaaaaaaactctttaaaacactaaaatacatgatatatgataaagagtcaccacaaccccatacttaaagtatcgcttgtcctca |
2131495 |
T |
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| Q |
200 |
agtaactaaaatagtcatacaattagtaaagtaacataaatttccaactacaatcattttatccgttcatttatataatcca |
281 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131496 |
agtaact-aaatagccatacaattagtaaagtaacataaatttccaactacaatcattttatccgttcatttatataatcca |
2131576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 24750922 - 24750959
Alignment:
| Q |
167 |
acaaccctaaacttaaagtatcgcttgtcctcaagtaa |
204 |
Q |
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| T |
24750922 |
acaaccctaaacttaaactattgcttgtcctcaagtaa |
24750959 |
T |
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