View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10496_high_15 (Length: 274)

Name: NF10496_high_15
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10496_high_15
NF10496_high_15
[»] scaffold0341 (2 HSPs)
scaffold0341 (1-257)||(12182-12438)
scaffold0341 (1-256)||(4558-4817)
[»] chr1 (10 HSPs)
chr1 (1-257)||(6510502-6510758)
chr1 (1-256)||(6502879-6503138)
chr1 (120-257)||(6514901-6515039)
chr1 (1-83)||(6515066-6515148)
chr1 (5-83)||(6497722-6497800)
chr1 (1-83)||(6525356-6525438)
chr1 (195-257)||(47775329-47775391)
chr1 (185-241)||(6497535-6497591)
chr1 (198-257)||(47771234-47771293)
chr1 (190-241)||(6525528-6525579)
[»] chr5 (5 HSPs)
chr5 (192-257)||(28859798-28859863)
chr5 (192-256)||(28854412-28854476)
chr5 (192-258)||(28828709-28828775)
chr5 (195-255)||(27368354-27368414)
chr5 (192-236)||(28874400-28874444)


Alignment Details
Target: scaffold0341 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 12438 - 12182
Alignment:
Q  1 atagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtgttnnnnnnntagtatt 100  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||||||    
T  12438 atagctgattttggcatggcaaggctttttagtattgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtattaaaaaaatagtatt 12339  T
Q  101 ggttgtttttaaattagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccatattgttttgtagtgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12338 ggttgtttttaaattagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccatattgttttgtagtgga 12239  T
Q  201 tatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtcttt 257  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12238 tatatggcacctgagtatgtaatgcaaggacagttttcagtaaaatccgatgtcttt 12182  T

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Target: scaffold0341; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 4817 - 4558
Alignment:
Q  1 atagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtgttnnnnnnntagtatt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||        ||||||    
T  4817 atagctgattttggcatggcaagactttttggtgttgaccaaacccagg-aaacacaaatagaattgtgggaacttagtaagcattcaaaaaaaagtatt 4719  T
Q  101 ggttgtttttaa--------------attagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccatat 186  Q
    |||||||||| |               |||||||||| || | | ||||||||||||||||| |||||| ||||||||||         | |  ||  ||    
T  4718 ggttgttttttattttaatcaggaggcttagtttatgtaaataaatagaaagttgaagataattgaaaacattttgctta---------accatcctcat 4628  T
Q  187 tgttttgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctt 256  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  4627 tgttttgtagcggatatatggcacctgagtatgtaatgcacggacaattttcggtaaaatcagatgtctt 4558  T

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Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 6510758 - 6510502
Alignment:
Q  1 atagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtgttnnnnnnntagtatt 100  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||||||    
T  6510758 atagctgattttggcatggcaaggctttttagtattgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtattaaaaaaatagtatt 6510659  T
Q  101 ggttgtttttaaattagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccatattgttttgtagtgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6510658 ggttgtttttaaattagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccatattgttttgtagtgga 6510559  T
Q  201 tatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtcttt 257  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6510558 tatatggcacctgagtatgtaatgcaaggacagttttcagtaaaatccgatgtcttt 6510502  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 6503138 - 6502879
Alignment:
Q  1 atagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtgttnnnnnnntagtatt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||        ||||||    
T  6503138 atagctgattttggcatggcaagactttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagcattcaaaaaa-agtatt 6503040  T
Q  101 ggttgtttttaaatt--------------agtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccatat 186  Q
    |||||||||| | ||              |||||||| || | | ||||||||||||||||| |||||| ||||||||||         | |  ||  ||    
T  6503039 ggttgttttttattttaatcaggaggcttagtttatgtaaataaatagaaagttgaagataattgaaaacattttgctta---------accatcctcat 6502949  T
Q  187 tgttttgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctt 256  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  6502948 tgttttgtagcggatatatggcacctgagtatgtaatgcacggacaattttcggtaaaatcagatgtctt 6502879  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 120 - 257
Target Start/End: Complemental strand, 6515039 - 6514901
Alignment:
Q  120 tatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaact-cccatattgttttgtagtggatatatggcacctgagtat 218  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||  |||||||||| |||||||| ||||||||||| ||||||    
T  6515039 tatgcaagttagtagaaagttgaagataagtaaaaatatttttcttaatttagctgaactatccatattgttatgtagtgggtatatggcaccagagtat 6514940  T
Q  219 gtaatgcacggacagttttcagtaaaatccgatgtcttt 257  Q
    |  | ||| ||||| ||||||  |||||| |||||||||    
T  6514939 gcgaggcatggacaattttcaacaaaatcagatgtcttt 6514901  T

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Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6515148 - 6515066
Alignment:
Q  1 atagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt 83  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  6515148 atagctgattttggcatggcaagactttttggtgtggaccaaacccaggaaaacacaaatagaattgtgggaacctagtaagt 6515066  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 6497800 - 6497722
Alignment:
Q  5 ctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt 83  Q
    ||||||||||||||||||| || |||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||    
T  6497800 ctgattttggcatggcaagactatttggtgtggaccaaacacaggaaaacacaaaaagaattgtgggaacctagtaagt 6497722  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 6525356 - 6525438
Alignment:
Q  1 atagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt 83  Q
    ||||| |||||||||||||| || || |||| ||| |||||||| |||||||| ||||| |||||||||||||| ||||||||    
T  6525356 atagcagattttggcatggctagactgtttgatgtggaccaaactcaggaaaatacaaacagaattgtgggaacctagtaagt 6525438  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 47775329 - 47775391
Alignment:
Q  195 agtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtcttt 257  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||| |||||||| |||||||||    
T  47775329 agtggatatatggcacctgagtatgcaatgcatggacaattttcggtaaaatcggatgtcttt 47775391  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 6497591 - 6497535
Alignment:
Q  185 attgttttgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagt 241  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||| ||||||||    
T  6497591 attgttttgtagtggatatatggcacctgaatatgctatgcacggacaattttcagt 6497535  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 47771234 - 47771293
Alignment:
Q  198 ggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtcttt 257  Q
    ||||| |||||||||||||||| |||||| ||||| ||||| |||||||| |||||||||    
T  47771234 ggatacatggcacctgagtatgcaatgcatggacaattttcggtaaaatcggatgtcttt 47771293  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 6525528 - 6525579
Alignment:
Q  190 tttgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagt 241  Q
    |||| ||||||||||||||||| ||||||| |||||| ||||| ||||||||    
T  6525528 tttgcagtggatatatggcaccggagtatgcaatgcatggacaattttcagt 6525579  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 28859863 - 28859798
Alignment:
Q  192 tgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtcttt 257  Q
    ||||| ||||||||||||||||||||||||||||| ||| | |||||||| ||||| |||||||||    
T  28859863 tgtagcggatatatggcacctgagtatgtaatgcatggagaattttcagtgaaatcagatgtcttt 28859798  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 28854476 - 28854412
Alignment:
Q  192 tgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctt 256  Q
    ||||| || |||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||    
T  28854476 tgtagcgggtatatggcacctgagtatgtaatgcatggagaattttcagtaaaatcagatgtctt 28854412  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 28828775 - 28828709
Alignment:
Q  192 tgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttg 258  Q
    ||||||||||| ||||||||||||||||||||||| ||| | ||||| || ||||| ||||||||||    
T  28828775 tgtagtggatacatggcacctgagtatgtaatgcatggagaattttcggtgaaatcagatgtctttg 28828709  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 27368414 - 27368354
Alignment:
Q  195 agtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtct 255  Q
    |||||||||||||||||||||||||  ||||| ||| | ||||| |||||||| |||||||    
T  27368414 agtggatatatggcacctgagtatgcgatgcatggagaattttcggtaaaatcagatgtct 27368354  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 28874444 - 28874400
Alignment:
Q  192 tgtagtggatatatggcacctgagtatgtaatgcacggacagttt 236  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||||    
T  28874444 tgtagcggatatatggcacctgagtatgtaatgcatggagagttt 28874400  T

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