View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10496_high_18 (Length: 262)
Name: NF10496_high_18
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 41650285 - 41650042
Alignment:
| Q |
1 |
atgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41650285 |
atgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgca |
41650186 |
T |
|
| Q |
101 |
actggatgtttatatgggacacctaattcatccaattttgttcgtataagcttactagtttt-aattcttgataactcagttcaggattctcatgaattt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41650185 |
actggatgtttatatgggacacctaattcatccaattttgttcgtataagcttactagttttaaattcttgataactcagttcaggattctcatgaattt |
41650086 |
T |
|
| Q |
200 |
ttctccttatatcaaccatgaaatcaaaaacttgaggttccttg |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41650085 |
ttctccttatatcaaccatgaaatcaaaaacttgaggttccttg |
41650042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 41654816 - 41654582
Alignment:
| Q |
10 |
tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt |
109 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41654816 |
tacctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt |
41654717 |
T |
|
| Q |
110 |
ttatatgggacacctaattcatccaattttgttcgtataagcttactagt-tttaattcttgataactcagttcaggattctcatgaatttttctcctta |
208 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |||||||||||| || | ||||||| ||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
41654716 |
ttatatgtaacacccaattcatccaattttgttcttataagcttactggtctcaaattcttcataaccaagttcaggattctcatgaatcttcctcctta |
41654617 |
T |
|
| Q |
209 |
tatcaaccatgaaatcaaaaacttgaggttccttg |
243 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
41654616 |
tatcaaccatccaatcaaaaacttgaggttccttg |
41654582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 43224083 - 43224316
Alignment:
| Q |
11 |
acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43224083 |
acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
43224182 |
T |
|
| Q |
111 |
tatatgggacacctaattcatccaattttgttcgtataagcttactagt-tttaattcttgataactcagttcaggattctcatgaatttttctccttat |
209 |
Q |
| |
|
||||| | ||||||||||||||||||| ||||| |||||||||||| || | ||||| | ||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
43224183 |
tatattgaacacctaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttat |
43224282 |
T |
|
| Q |
210 |
atcaaccatgaaatcaaaaacttgaggttccttg |
243 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
43224283 |
atcaaccatccaatcaaaaacttgaggttccttg |
43224316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 43213347 - 43213574
Alignment:
| Q |
10 |
tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt |
109 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43213347 |
tacctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgt |
43213446 |
T |
|
| Q |
110 |
ttatatgggacacctaattcatccaattttgttcgtataagcttactagttt-taattcttgataactcagttcaggattctcatgaatttttctcctta |
208 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||||||| ||||| | |||||||||||||||||| || ||||||| |
|
|
| T |
43213447 |
ttatatgggacacctaattcatctaattttgttcttataagcttactggtttcaaattcttcataaccaacttcaggattctcatgaatcttcctcctta |
43213546 |
T |
|
| Q |
209 |
tatcaaccatgaaatcaaaaacttgagg |
236 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
43213547 |
tatcaaccatccaatcaaaaacttgagg |
43213574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 43227884 - 43228106
Alignment:
| Q |
11 |
acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43227884 |
acctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
43227983 |
T |
|
| Q |
111 |
tatatgggacacctaattcatccaattttgttcgtataagcttactagt-tttaattcttgataactcagttcaggattctcatgaatttttctccttat |
209 |
Q |
| |
|
||||| | ||||| || |||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43227984 |
tatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggattctcatgaatttttctccttat |
43228083 |
T |
|
| Q |
210 |
atcaaccatgaaatcaaaaactt |
232 |
Q |
| |
|
| |||||| | |||||||||| |
|
|
| T |
43228084 |
agaaaccatccagtcaaaaactt |
43228106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 43206374 - 43206596
Alignment:
| Q |
11 |
acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
110 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43206374 |
acctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
43206473 |
T |
|
| Q |
111 |
tatatgggacacctaattcatccaattttgttcgtataagcttactagt-tttaattcttgataactcagttcaggattctcatgaatttttctccttat |
209 |
Q |
| |
|
||||| | ||||| || |||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43206474 |
tatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggattctcatgaatttttctccttat |
43206573 |
T |
|
| Q |
210 |
atcaaccatgaaatcaaaaactt |
232 |
Q |
| |
|
| |||||| | |||||||||| |
|
|
| T |
43206574 |
agaaaccatccagtcaaaaactt |
43206596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 5073627 - 5073719
Alignment:
| Q |
22 |
aagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtttata |
114 |
Q |
| |
|
||||||||||||||||||||| | ||| |||||||||| | |||||||||||| ||||||| ||||| || | ||||||||||| |||||| |
|
|
| T |
5073627 |
aagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatttata |
5073719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University