View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10496_high_19 (Length: 260)

Name: NF10496_high_19
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10496_high_19
NF10496_high_19
[»] chr8 (5 HSPs)
chr8 (69-220)||(454879-455030)
chr8 (55-146)||(474047-474138)
chr8 (52-146)||(466578-466672)
chr8 (50-139)||(445776-445865)
chr8 (80-146)||(479546-479612)
[»] chr2 (1 HSPs)
chr2 (54-146)||(27493757-27493849)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 69 - 220
Target Start/End: Original strand, 454879 - 455030
Alignment:
Q  69 gagtccaagagtatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggtatattttactatcaccaccttat 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  454879 gagtccaagagtatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggtatattttactatcaccaccttat 454978  T
Q  169 ctatcctttcctcttatctaaagtctattaagtaatttattgtttctattcc 220  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  454979 ctatcctttcctcttatctaaagtttattaagtaatttattgtttctattcc 455030  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 474047 - 474138
Alignment:
Q  55 cttttggagggtatgagtccaagagtatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggta 146  Q
    |||||||||||||||||||| |  |||||| |||| ||||||  |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  474047 cttttggagggtatgagtcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctgggta 474138  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 466578 - 466672
Alignment:
Q  52 gcacttttggagggtatgagtccaagagtatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggta 146  Q
    ||||||||||||||||||||||||||  ||||| |||| ||||||  |||||||||||||||| ||||||||||| | ||||||||||| |||||    
T  466578 gcacttttggagggtatgagtccaaggatatttgtagtataccgtagtgcttttgcaaccattgttcttgctcccctcgcttatttatcagggta 466672  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 445776 - 445865
Alignment:
Q  50 ttgcacttttggagggtatgagtccaagagtatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttat 139  Q
    |||||||||||||||||||||| ||    |||||| || | |||||| ||||||||||||||||| |||||||||| |||||||||||||    
T  445776 ttgcacttttggagggtatgagcccggcggtatttgtaatgtaccgtaatgcttttgcaaccatttttcttgctccaattgcttatttat 445865  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 479546 - 479612
Alignment:
Q  80 tatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggta 146  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||  |||||||||| || |||||    
T  479546 tatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggta 479612  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 27493849 - 27493757
Alignment:
Q  54 acttttggagggtatgagtccaagagtatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggta 146  Q
    ||||||||||||| |||||||||  |||||| |||| || ||  ||||||||||||||||| ||||||||||  ||||||||||||| |||||    
T  27493849 acttttggagggtttgagtccaatggtatttgtagtatatcgctatgcttttgcaaccatttttcttgctcctgttgcttatttatcagggta 27493757  T

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