View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10496_high_2 (Length: 580)
Name: NF10496_high_2
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 20 - 573
Target Start/End: Complemental strand, 25392623 - 25392070
Alignment:
| Q |
20 |
gctgtgtcacaaaaacttattcttattaatggtccattcaagaatgcacatttaacatccatctgatgtattgacaagtttttgatattggctaatgcaa |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25392623 |
gctgtgtcacaaaaacctattcttattaatggtccattcaagaatgcacatttaacatccatatgatgtattgacaagtttttgatattggccaatgcaa |
25392524 |
T |
|
| Q |
120 |
caactaatc----ttatggtctcaactcttgcaactactgcgtacacttcttcaaaatcaatgccttctttttgaagaaaccctttagcaaccagtccgg |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
25392523 |
caactaatcgatcttatggtctcaactcttgcaactagtgcgtacacttcttcaaaatcaatgccttctttttgaagaaaccctttagccagcagtccgg |
25392424 |
T |
|
| Q |
216 |
ctttgtgcctcactatttcacctttaggattcagtttcactttgtacacccatttaaccctaatgaccttttttccttttggtaactcaacaagtgacca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25392423 |
ctttgtgcctcactatttcacctttaggattcagtttcactttgtacacccatttaaccctaatgaccttttttccttttggtaactcaacaagtgacca |
25392324 |
T |
|
| Q |
316 |
tgttttattgctttcattagaatttagttcctctttcatagctttcgtagtttactggttcagattatgcaagaaatactaagtggacaagttcaccatc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25392323 |
tgttttattgctttcattagaatttagttcctctttcatagctttcgtagcttactggttcagattatttaagaaatactaagtggacaagttcaccatc |
25392224 |
T |
|
| Q |
416 |
atttgttacttcactatctggtgtgagtgactttgcaatcttgcagtcttgttggcatacttctatgaatttgaggtcttcttgtttcactttgagttgt |
515 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25392223 |
atttgttacttcactatctggt----gtgactttgcaatcttgcagtcttgttggcatacttctatgaatttgaggtcttcttgtttcactttgagttgt |
25392128 |
T |
|
| Q |
516 |
tgattcatcacttctagatgaatcttcacacatcaatcttattgtgttcttcatctca |
573 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25392127 |
tgattcgtcacttctagatgaatcttcacacatcaatcttattgtgttcttcatctca |
25392070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 46 - 320
Target Start/End: Complemental strand, 7169581 - 7169308
Alignment:
| Q |
46 |
taatggtccattcaagaatgcacatttaacatccatctgatgtattgacaagtttttgatattggctaatgcaacaactaatcttatggtctcaactctt |
145 |
Q |
| |
|
|||||| ||||| || |||||||| || |||||||| |||||||| ||| ||| || ||||||| | |||| |||||||||||| || | || ||| |
|
|
| T |
7169581 |
taatggaccatttaaaaatgcacactttacatccatttgatgtatagacttgttgatggtattggcaatggcaataactaatcttattgtttaaattcta |
7169482 |
T |
|
| Q |
146 |
gcaactactgcgtacacttcttcaaaatcaatgccttctttttgaagaaaccctttagcaaccagtccggctttgtgcctcactatttcacctttaggat |
245 |
Q |
| |
|
||||| ||| |||||||||| ||||||||| | ||| |||||| |||||| || || ||||||| |||||||| || |||||||||| |||||||| |
|
|
| T |
7169481 |
acaactggtgcatacacttctttaaaatcaatacattccttttgatgaaaccaatttgccaccagtctcgctttgtgtctaactatttcacttttaggat |
7169382 |
T |
|
| Q |
246 |
tcagtttcactttgtacacccatttaaccctaatgaccttttttccttttggtaactcaacaagtgaccatgttt |
320 |
Q |
| |
|
| | ||| |||||| |||||||| || | |||| || | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
7169381 |
ttaacatcaatttgtatacccatttcactcaaatggcc-tatttccttttggtaactcaacatttgaccatgttt |
7169308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University