View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10496_high_22 (Length: 249)

Name: NF10496_high_22
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10496_high_22
NF10496_high_22
[»] chr4 (8 HSPs)
chr4 (2-230)||(4113989-4114217)
chr4 (80-124)||(7209259-7209303)
chr4 (80-124)||(30666897-30666941)
chr4 (80-120)||(54933155-54933195)
chr4 (83-120)||(49716115-49716152)
chr4 (79-120)||(55550536-55550577)
chr4 (84-120)||(27184099-27184135)
chr4 (80-124)||(30617611-30617655)
[»] chr8 (3 HSPs)
chr8 (83-124)||(2167995-2168036)
chr8 (80-124)||(24456377-24456421)
chr8 (80-120)||(44328520-44328560)
[»] chr3 (6 HSPs)
chr3 (80-133)||(11364821-11364874)
chr3 (80-152)||(11380183-11380259)
chr3 (80-124)||(4228846-4228890)
chr3 (80-120)||(54261848-54261888)
chr3 (83-120)||(37797817-37797854)
chr3 (10-64)||(50170582-50170632)
[»] chr7 (4 HSPs)
chr7 (80-124)||(6271325-6271369)
chr7 (83-124)||(43131950-43131991)
chr7 (96-147)||(10227786-10227840)
chr7 (79-120)||(42239301-42239342)
[»] chr2 (9 HSPs)
chr2 (80-124)||(39187522-39187566)
chr2 (86-124)||(15080158-15080196)
chr2 (80-124)||(4860515-4860559)
chr2 (80-120)||(24256030-24256070)
chr2 (80-191)||(37625000-37625127)
chr2 (80-120)||(21417577-21417617)
chr2 (80-120)||(21418260-21418300)
chr2 (80-120)||(26913475-26913515)
chr2 (80-124)||(34070815-34070859)
[»] chr1 (6 HSPs)
chr1 (80-124)||(43457956-43458000)
chr1 (80-120)||(16650631-16650671)
chr1 (80-124)||(37209858-37209902)
chr1 (86-120)||(49497098-49497132)
chr1 (80-120)||(42489244-42489284)
chr1 (80-120)||(52507550-52507590)
[»] scaffold1173 (1 HSPs)
scaffold1173 (80-133)||(143-196)
[»] scaffold0118 (1 HSPs)
scaffold0118 (80-120)||(19629-19669)
[»] chr6 (8 HSPs)
chr6 (80-120)||(4213305-4213345)
chr6 (7-64)||(15528449-15528502)
chr6 (80-120)||(24202058-24202098)
chr6 (79-120)||(11753011-11753052)
chr6 (154-183)||(15528314-15528343)
chr6 (83-124)||(29383975-29384016)
chr6 (84-120)||(2444076-2444112)
chr6 (79-123)||(15528389-15528433)
[»] chr5 (6 HSPs)
chr5 (80-120)||(10031413-10031453)
chr5 (80-120)||(30341923-30341963)
chr5 (81-120)||(3700316-3700355)
chr5 (81-120)||(3868795-3868834)
chr5 (79-120)||(1866939-1866980)
chr5 (80-116)||(38869947-38869983)
[»] scaffold0770 (1 HSPs)
scaffold0770 (80-120)||(5158-5198)
[»] scaffold0029 (1 HSPs)
scaffold0029 (80-120)||(103456-103496)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 4113989 - 4114217
Alignment:
Q  2 gttaaataggaaatgttaacttgtttgggcccttggggcataagttaaaaaactaaatgtagannnnnnnnnnng-actttgtgcatttaatatcttaaa 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||             | ||||||||||||||||||||||    
T  4113989 gttaaataggaaatgttaacttgtttgggtccttggggcataagttaagaaactaaatgtagatttttttatttttattttgtgcatttaatatcttaaa 4114088  T
Q  101 agttgcaaaagttatactttcaatttattttttaatttccattttaagctccacccttagggcacaagttaacatgaccatatttaaatagcttattatc 200  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  4114089 agttgcaaaagttatactttcaatttattttt-aattttcattttaagctccacccttaggacacaagttaacatgaccctatttaaatagcttattatc 4114187  T
Q  201 atgataagcatttatgtttccaaattaagt 230  Q
    ||||||||||||||||||||||||||||||    
T  4114188 atgataagcatttatgtttccaaattaagt 4114217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 7209259 - 7209303
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||    
T  7209259 ttgtgcattcaatgtcttaaaagttgcaaaagttatactttcaat 7209303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 30666897 - 30666941
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    ||||||||| ||| |||||||||||||||||||||||||| ||||    
T  30666897 ttgtgcattcaatgtcttaaaagttgcaaaagttatacttccaat 30666941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 54933155 - 54933195
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  54933155 ttgtgtattcaatatcttaaaagttgcaaaagttatacttt 54933195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 49716152 - 49716115
Alignment:
Q  83 tgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  49716152 tgcatttaatctcttaaaagttgcaaaagttacacttt 49716115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 55550536 - 55550577
Alignment:
Q  79 tttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    |||||||||||||| |||||||| |||||||||||| |||||    
T  55550536 tttgtgcatttaatctcttaaaaattgcaaaagttacacttt 55550577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 27184099 - 27184135
Alignment:
Q  84 gcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  27184099 gcatttaatgtcttaaaaattgcaaaagttatacttt 27184135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 30617655 - 30617611
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    ||||||||| ||| ||||||||||| |||||||||| ||||||||    
T  30617655 ttgtgcattcaatctcttaaaagtttcaaaagttatcctttcaat 30617611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 2167995 - 2168036
Alignment:
Q  83 tgcatttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  2167995 tgcatttaatatcttaaaatttgcaaaagttatactttcaat 2168036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 24456421 - 24456377
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    ||||||||| ||| | |||||||||||||||||||||||||||||    
T  24456421 ttgtgcattcaatgttttaaaagttgcaaaagttatactttcaat 24456377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 44328520 - 44328560
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||| ||| |||||||| ||||||||||||||||||    
T  44328520 ttgtgcattcaatgtcttaaaaattgcaaaagttatacttt 44328560  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 11364874 - 11364821
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaatttatttttt 133  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||| || |||||    
T  11364874 ttgtgcattcaatatcttaaaagttccaaaagttatactttcaatataattttt 11364821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 11380259 - 11380183
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat----ttattttttaatttccattttaagctcc 152  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||||    || |||||||||||| ||||||| ||||    
T  11380259 ttgtgcattcaatatcttaaatgtttcaaaagttatactttcaatataatttttttttaatttcaattttaaactcc 11380183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 4228890 - 4228846
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||    
T  4228890 ttgtgcattcaatatcttaaaagtaacaaaagttatactttcaat 4228846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 54261888 - 54261848
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  54261888 ttgtgcattcaatatcttaaaagttgcaaaagttagacttt 54261848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 37797817 - 37797854
Alignment:
Q  83 tgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  37797817 tgcatttaatctcttaaaagttgcaaaagttacacttt 37797854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 50170632 - 50170582
Alignment:
Q  10 ggaaatgttaacttgtttgggcccttggggcataagttaaaaaactaaatgtaga 64  Q
    ||||||||||||||||    |||||||||||||||||||| |||| |||||||||    
T  50170632 ggaaatgttaacttgt----gcccttggggcataagttaagaaaccaaatgtaga 50170582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 6271369 - 6271325
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||    
T  6271369 ttgtgcattcaatagcttaaaagttgcaaaagttatactttcaat 6271325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 43131991 - 43131950
Alignment:
Q  83 tgcatttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  43131991 tgcattcaatatcttaaaaattgcaaaagttatactttcaat 43131950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 10227840 - 10227786
Alignment:
Q  96 ttaaaagttgcaaaagttatactttcaat-tta--ttttttaatttccattttaa 147  Q
    ||||||||||||||||||||| ||||||| |||  ||||||||||||||||||||    
T  10227840 ttaaaagttgcaaaagttataatttcaatattattttttttaatttccattttaa 10227786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 42239342 - 42239301
Alignment:
Q  79 tttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    |||||||||||||| |||||||| |||||||||||| |||||    
T  42239342 tttgtgcatttaatctcttaaaaattgcaaaagttacacttt 42239301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 39187522 - 39187566
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||    
T  39187522 ttgtgcattcaatatcttaaaagttgcaaaagttatattttcaat 39187566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 15080158 - 15080196
Alignment:
Q  86 atttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  15080158 atttaatgtcttaaaagttgcaaaagttatactttcaat 15080196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 4860559 - 4860515
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||||    
T  4860559 ttgtgcattcaatgtcttaaaagttgcaaaaattatactttcaat 4860515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 24256030 - 24256070
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  24256030 ttgtgcatttaatctcttaaaagttgcaaaagttacacttt 24256070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 191
Target Start/End: Original strand, 37625000 - 37625127
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat------ttattttttaatttccattttaagctcc---------acccttagggca 164  Q
    ||||||||| |||||||||||||||  |||||||||| |||||||      ||  ||||||||||||||||||||||||         ||||||||| ||    
T  37625000 ttgtgcattcaatatcttaaaagttttaaaagttatattttcaatataaaatttatttttaatttccattttaagctccttattttgtacccttaggaca 37625099  T
Q  165 caagttaacatga-ccatatttaaatag 191  Q
    ||||||||||||| || |||||||||||    
T  37625100 caagttaacatgacccttatttaaatag 37625127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 21417617 - 21417577
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||||||| |||||||||||||||| |||| |||||    
T  21417617 ttgtgcatttaatctcttaaaagttgcaaaggttacacttt 21417577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 21418300 - 21418260
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||||||| |||||||||||||||| |||| |||||    
T  21418300 ttgtgcatttaatctcttaaaagttgcaaaggttacacttt 21418260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 26913475 - 26913515
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||||||| | ||||||||||||||||||| |||||    
T  26913475 ttgtgcatttaatcttttaaaagttgcaaaagttacacttt 26913515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 34070815 - 34070859
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    ||||||||| ||| | ||||||||||||||||| |||||||||||    
T  34070815 ttgtgcattcaatgttttaaaagttgcaaaagtaatactttcaat 34070859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 43458000 - 43457956
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||    
T  43458000 ttgtgcattcaatgtcttaaaagttgcaaaagttatactttcaat 43457956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 16650631 - 16650671
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  16650631 ttgtgcatttaatctcttaaaagttgcaaaagttacacttt 16650671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 37209858 - 37209902
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||    
T  37209858 ttgtgcatttaatatcttaaaagtttcaaaagttatcttttcaat 37209902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 49497132 - 49497098
Alignment:
Q  86 atttaatatcttaaaagttgcaaaagttatacttt 120  Q
    |||||||||||||| ||||||||||||||||||||    
T  49497132 atttaatatcttaagagttgcaaaagttatacttt 49497098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 42489284 - 42489244
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||| | | |||||||||||||||||||||||||||    
T  42489284 ttgtgcattcattgtcttaaaagttgcaaaagttatacttt 42489244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 52507590 - 52507550
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||||||| | ||||||||||||||||||| |||||    
T  52507590 ttgtgcatttaatcttttaaaagttgcaaaagttacacttt 52507550  T

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Target: scaffold1173 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 196 - 143
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaatttatttttt 133  Q
    ||||||||| ||||||||||||||| ||||||||||||||| ||| || |||||    
T  196 ttgtgcattcaatatcttaaaagtttcaaaagttatacttttaatataattttt 143  T

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Target: scaffold0118 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 19629 - 19669
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  19629 ttgtgcatttaatctcttaaaagttgcaaaagttacacttt 19669  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 4213305 - 4213345
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  4213305 ttgtgcatttaatctcttaaaagttgcaaaagttacacttt 4213345  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 15528502 - 15528449
Alignment:
Q  7 ataggaaatgttaacttgtttgggcccttggggcataagttaaaaaactaaatgtaga 64  Q
    ||||||||||||||||||| |     ||||||||||||||||||||||||||||||||    
T  15528502 ataggaaatgttaacttgtgtt----cttggggcataagttaaaaaactaaatgtaga 15528449  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 24202098 - 24202058
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  24202098 ttgtgcatttaatctcttaaaagttgcaaaagttacacttt 24202058  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 11753052 - 11753011
Alignment:
Q  79 tttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    |||||||||| ||| ||||||| |||||||||||||||||||    
T  11753052 tttgtgcattcaatgtcttaaatgttgcaaaagttatacttt 11753011  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 15528343 - 15528314
Alignment:
Q  154 cccttagggcacaagttaacatgaccatat 183  Q
    ||||||||||||||||||||||||||||||    
T  15528343 cccttagggcacaagttaacatgaccatat 15528314  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 29384016 - 29383975
Alignment:
Q  83 tgcatttaatatcttaaaagttgcaaaagttatactttcaat 124  Q
    |||||| ||| |||||||||||| ||||||||||||||||||    
T  29384016 tgcattcaatgtcttaaaagttggaaaagttatactttcaat 29383975  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 2444112 - 2444076
Alignment:
Q  84 gcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  2444112 gcatttaatgtcttaaaaattgcaaaagttatacttt 2444076  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 15528433 - 15528389
Alignment:
Q  79 tttgtgcatttaatatcttaaaagttgcaaaagttatactttcaa 123  Q
    |||||| ||||||| |||||||||||| |||||||||| ||||||    
T  15528433 tttgtgaatttaatgtcttaaaagttgtaaaagttatattttcaa 15528389  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 10031453 - 10031413
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  10031453 ttgtgcatttaatctcttaaaagttgcaaaagttacacttt 10031413  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 30341923 - 30341963
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  30341923 ttgtgcatttaatctcttaaaagttgcaaaagttacacttt 30341963  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 3700355 - 3700316
Alignment:
Q  81 tgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  3700355 tgtgcatttaatctcttaaaagttgcaaaagttacacttt 3700316  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 3868795 - 3868834
Alignment:
Q  81 tgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  3868795 tgtgcatttaatctcttaaaagttgcaaaagttacacttt 3868834  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 1866939 - 1866980
Alignment:
Q  79 tttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    |||||||||| |||||||||||||| |||||| |||||||||    
T  1866939 tttgtgcattcaatatcttaaaagtggcaaaaattatacttt 1866980  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 38869983 - 38869947
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttata 116  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  38869983 ttgtgcattcaatatcttaaaaattgcaaaagttata 38869947  T

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Target: scaffold0770 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 5158 - 5198
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||||||| ||||||||||| ||||||||| |||||    
T  5158 ttgtgcatttaatctcttaaaagttacaaaagttacacttt 5198  T

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Target: scaffold0029 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 103456 - 103496
Alignment:
Q  80 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 120  Q
    ||||||||||||| ||||||||||| ||||||||| |||||    
T  103456 ttgtgcatttaatctcttaaaagttacaaaagttacacttt 103496  T

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