View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10496_high_24 (Length: 245)
Name: NF10496_high_24
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 24879511 - 24879287
Alignment:
| Q |
1 |
tgatctatcacgcattctgacaggagacctgctgtaaggagagcaagaccgagaatatgatctgtgccggtcataacgatagtacgatctgcgtcgactg |
100 |
Q |
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| T |
24879511 |
tgatctatcacgcattctgacaggagacctgctgtaaggagagcgagaccgagaatatgatctgtgccggtcataacgatagtacgatctgcgtcgactg |
24879412 |
T |
|
| Q |
101 |
tagtatggcgagtatgccctccttcgcctgtagtcaggagagtaagacctccttcgcctgtaatcaggtgagtaagagcgactcctactgtggtctgatg |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24879411 |
tagtatggtgagtatgccctccttcgcctgtagtcaggagagtaagacctccttcgcctgtaatcaggtgagtaagagcgactcctactatggtctgatg |
24879312 |
T |
|
| Q |
201 |
aataaggtgaacgactgtagcttct |
225 |
Q |
| |
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|||||||||||||| |||||||||| |
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| T |
24879311 |
aataaggtgaacgattgtagcttct |
24879287 |
T |
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