View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10496_high_27 (Length: 239)
Name: NF10496_high_27
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 37992664 - 37992867
Alignment:
| Q |
20 |
aaggaaatcaataaagatagttaatcatgttaaccttcgccttaaatatgttaaagtctccaaatattatcaaaatcacattttgaggaattttatcatc |
119 |
Q |
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| T |
37992664 |
aaggaaatcaataaagatagttaatcatgttaaccttcgccttaaatatgttaaagtctccaaatattatcaaaattacattttgaggaattttatcatc |
37992763 |
T |
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| Q |
120 |
tcctcgtatatctaaattccctaaacatctctaatttcataatgatgatttcatcacttaaagttgagtgaataagcaaataaaacagtcactcactttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37992764 |
tcctcgtatatctaaattccctaaacatctctaatttcataatgatgatttcatcacttaaagttgagtgaataagcaaatacaacagtcactcactttg |
37992863 |
T |
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| Q |
220 |
attc |
223 |
Q |
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|||| |
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| T |
37992864 |
attc |
37992867 |
T |
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