View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10496_high_6 (Length: 484)

Name: NF10496_high_6
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10496_high_6
NF10496_high_6
[»] chr5 (4 HSPs)
chr5 (14-467)||(17739658-17740111)
chr5 (281-337)||(40483739-40483795)
chr5 (279-338)||(2243276-2243335)
chr5 (277-318)||(7215448-7215489)
[»] chr8 (2 HSPs)
chr8 (274-363)||(32166735-32166825)
chr8 (279-340)||(29969153-29969214)
[»] chr1 (4 HSPs)
chr1 (273-382)||(38839576-38839686)
chr1 (287-338)||(41148596-41148647)
chr1 (273-338)||(7104315-7104380)
chr1 (264-324)||(68139-68198)
[»] chr2 (2 HSPs)
chr2 (263-368)||(16576289-16576393)
chr2 (273-337)||(16863506-16863570)
[»] chr7 (2 HSPs)
chr7 (280-336)||(23944133-23944189)
chr7 (274-339)||(757901-757966)
[»] chr4 (3 HSPs)
chr4 (263-331)||(25062360-25062427)
chr4 (273-340)||(22050902-22050969)
chr4 (263-324)||(20512801-20512861)


Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 14 - 467
Target Start/End: Original strand, 17739658 - 17740111
Alignment:
Q  14 cacagacaaaggttgttcaaagcaatgaatcatgacattagattatgcatatatctaatccttttgcagcattaatatcttatctgccttttgtttctaa 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17739658 cacatacaaaggttgttcaaagcaatgaatcatgacattagattatgcatatatctaatccttttgcagcattaatatcttatctgccttttgtttctaa 17739757  T
Q  114 caattaaatagcttattgaccacattatcacatggcagcatgtttggtccctgtccatgtaggtctttttgtggaaaaacttcattaactctcattcact 213  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17739758 caattaaatagcttattgaccacaaaatcacatggcagcatgtttggtccctgtccatgtaggtctttttgtggaaaaacttcattaactctcattcact 17739857  T
Q  214 tgctgttattacgcacttgagaacatagttatatttacattgcgatcaaaaacttcttccatcttcttcatttaacatgtgattttcatctccttcgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17739858 tgctgttattacgcacttgagaacatagttatatttacattgcgatcaaaaacttctt-catcttcttcatttaacatgtgattttcatctccttcgttc 17739956  T
Q  314 cagaatcgaattctacttatcatta-agatgaatttcactcaattcatcaaggggttatgtaagtctcactgtctattaaattatatcttatgatttctg 412  Q
    ||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  17739957 cagaatcgaatcctacttattattagggatgaatttcactcaattcatcaaggggtaatgtaagtctcaccgtctattaaattatatcttatgatttctg 17740056  T
Q  413 aaccataggtaatgctcagaaaatatgattcattactaaatagacacccttattt 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17740057 aaccataggtaatgctcagaaaatatgattcattactaaatagacacccttattt 17740111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 337
Target Start/End: Original strand, 40483739 - 40483795
Alignment:
Q  281 tcatttaacatgtgattttcatctccttcgttccagaatcgaattctacttatcatt 337  Q
    ||||| |||||||||| |||||||| ||||||||| ||||||||  |||||||||||    
T  40483739 tcattcaacatgtgatcttcatctcattcgttccaaaatcgaatcatacttatcatt 40483795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 2243335 - 2243276
Alignment:
Q  279 cttcatttaacatgtgattttcatctccttcgttccagaatcgaattctacttatcatta 338  Q
    ||||||| |||||||||| | ||||| |||||||| ||||||||||| ||||| ||||||    
T  2243335 cttcattcaacatgtgatctccatcttcttcgttctagaatcgaattttacttgtcatta 2243276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 7215489 - 7215448
Alignment:
Q  277 ttcttcatttaacatgtgattttcatctccttcgttccagaa 318  Q
    ||||||||| |||||||||| |||||||| ||||||||||||    
T  7215489 ttcttcattcaacatgtgatcttcatctctttcgttccagaa 7215448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 32166825 - 32166735
Alignment:
Q  274 atcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaattctacttatcatta-agatgaatttcactcaattcatcaa 363  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||||  ||||| |||||| || | |||| ||| |||||||||||    
T  32166825 atcttcttcatttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaa 32166735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 29969153 - 29969214
Alignment:
Q  279 cttcatttaacatgtgattttcatctccttcgttccagaatcgaattctacttatcattaag 340  Q
    ||||||| |||||||||| |||||||| ||||||||| ||||||||||||||| ||||||||    
T  29969153 cttcattcaacatgtgatattcatctctttcgttccataatcgaattctacttgtcattaag 29969214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 273 - 382
Target Start/End: Complemental strand, 38839686 - 38839576
Alignment:
Q  273 catcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaattctacttatcattaaga-tgaatttcactcaattcatcaaggggttat 371  Q
    |||||||||||||  ||||||||| || |||| |||||||||| |||||||| |||||| |||||| || | |||| |  ||| ||||||||||||| ||    
T  38839686 catcttcttcattcgacatgtgatcttgatcttcttcgttccacaatcgaatcctacttttcattaggagttaattaccgtcagttcatcaaggggtaat 38839587  T
Q  372 gtaagtctcac 382  Q
    ||| |||||||    
T  38839586 gtaggtctcac 38839576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 41148647 - 41148596
Alignment:
Q  287 aacatgtgattttcatctccttcgttccagaatcgaattctacttatcatta 338  Q
    |||||||||| | |||||||||||||| ||||||||||||||||| ||||||    
T  41148647 aacatgtgatatccatctccttcgttctagaatcgaattctacttttcatta 41148596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 7104315 - 7104380
Alignment:
Q  273 catcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaattctacttatcatta 338  Q
    ||||| ||||||| ||||||| || |||||||| |||||| |||||||||||  ||||| ||||||    
T  7104315 catctccttcattcaacatgtaatattcatctctttcgtttcagaatcgaatcatacttgtcatta 7104380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 68139 - 68198
Alignment:
Q  264 aacttcttccatcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaat 324  Q
    ||||||||| |||| |||||||||||||||||| | |||||  ||||||||| ||||||||    
T  68139 aacttcttc-atctccttcatttaacatgtgatctccatctttttcgttccaaaatcgaat 68198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 368
Target Start/End: Original strand, 16576289 - 16576393
Alignment:
Q  263 aaacttcttccatcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaattctacttatcattaagatgaatttcactcaattcatca 362  Q
    |||||||||| |||| ||||||| |||||||||| | | |||| ||||||||||||||||||  |||||||||||| |   || || || ||||||||||    
T  16576289 aaacttcttc-atctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattaggggtaaattaacccaattcatca 16576387  T
Q  363 aggggt 368  Q
    ||||||    
T  16576388 aggggt 16576393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 16863506 - 16863570
Alignment:
Q  273 catcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaattctacttatcatt 337  Q
    ||||||||| ||| || ||||||| | |||||||||||||  |||||||||| |||||| |||||    
T  16863506 catcttctttattcaatatgtgatctacatctccttcgttatagaatcgaatcctacttgtcatt 16863570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 23944133 - 23944189
Alignment:
Q  280 ttcatttaacatgtgattttcatctccttcgttccagaatcgaattctacttatcat 336  Q
    |||||| |||||||||||| |||||||||  ||||||||||||||  ||||||||||    
T  23944133 ttcattcaacatgtgatttccatctcctttattccagaatcgaatcatacttatcat 23944189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 757966 - 757901
Alignment:
Q  274 atcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaattctacttatcattaa 339  Q
    |||| ||||||| |||||||||| |||||||||||| ||| | ||| |||| |||||||| |||||    
T  757966 atctccttcattcaacatgtgatcttcatctccttcattctataattgaatcctacttattattaa 757901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 25062360 - 25062427
Alignment:
Q  263 aaacttcttccatcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaattctactt 331  Q
    |||||||||| |||| ||||||| |||||||||| ||||||||||| |||||| |||| ||| ||||||    
T  25062360 aaacttcttc-atctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctactt 25062427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 22050902 - 22050969
Alignment:
Q  273 catcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaattctacttatcattaag 340  Q
    ||||| ||||||| |||||||||| |||||||| ||| || |||||||||||  || |||||||||||    
T  22050902 catctccttcattcaacatgtgatcttcatctcattcctttcagaatcgaatcatatttatcattaag 22050969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 20512861 - 20512801
Alignment:
Q  263 aaacttcttccatcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaat 324  Q
    |||||||||| |||||||||||||||||||| || | ||| ||||||||| || ||||||||    
T  20512861 aaacttcttc-atcttcttcatttaacatgtaatctccatatccttcgtttcataatcgaat 20512801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University