View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10496_high_7 (Length: 465)
Name: NF10496_high_7
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_high_7 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 26 - 448
Target Start/End: Original strand, 499006 - 499428
Alignment:
| Q |
26 |
tttataactgtagttgttttatgcatttagatttgatgcaagtttgtatatctcatgtcttatcgaaagaagactttgagactctaaacttgagcagaag |
125 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
499006 |
tttataacttttgttgttttatgcatttagatttgatgcaagtttgtatatctcatgtcttatcgaaagaagactttgagactctaaacttgagcagaag |
499105 |
T |
|
| Q |
126 |
tatgatggaaagaggagaatgtccgctcctcatggttgtttttgatcatgcagaagggtaagtacttatgcaactcgcatcaaaattttcatcttttgca |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
499106 |
tatgatggaaagaggagaatgtccgctcctcatggttgtttttgatcatgcagaagggtaagtacttatgcaactcacatcaaaattttcatcttttgca |
499205 |
T |
|
| Q |
226 |
ctccattcctgacttttaatcgttcttttgtaggtttactgtagaagcggataaatccataaaagacttgacagtaataagagaatatgttggagatata |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
499206 |
ctccattcctgacttttaatcgttcttttgtaggtatactgtagaagcggataaatccataaaagacttgacagtaataagagaatatgttggagatata |
499305 |
T |
|
| Q |
326 |
gactttttaaagaatcgtgaatatgacgacggagataggattatgacacttctttccacatctaatccttcacaatcactggtcgtctttccagataaat |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
499306 |
gactttttaaagaatcgtgaatatgacgacggagataggattatgacacttctttccgcatctaatccttcacaatcactggtcgtctttccagataaac |
499405 |
T |
|
| Q |
426 |
gtagcaacatagcacctttcatt |
448 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
499406 |
gtagcaacatagcacctttcatt |
499428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 15 - 448
Target Start/End: Original strand, 490348 - 490796
Alignment:
| Q |
15 |
gagcacagatgtttataactgtagttgttttatgcatttagatttgatgcaagtttgtatat-------ctcatgtcttatcgaaagaagactttgagac |
107 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||| ||| |||||| |||| |||||||| ||||||||| ||||| |
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|
| T |
490348 |
gagcacagatgtttataactactgttgttatatgcatttagatttgatgcatgttcgtatatattttttctcaggtcttatcaaaagaagacaccgagac |
490447 |
T |
|
| Q |
108 |
tctaaacttgagcagaagtatgatggaaagaggagaatgtccgctcctcatggttgtttttgatcatgcagaagggtaagtacttatgcaactcgca--- |
204 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| | | |
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|
| T |
490448 |
tcttaacttgtgcagaagtatgatggaaagaggagaatgtccgcccctcatggttgtttatgatcctgtagaagggtaagtacttatgcaacacaaactg |
490547 |
T |
|
| Q |
205 |
---tcaaaattttcatcttttgcactccattcctgacttttaatcgttctttt---gtaggtttactgtagaagcggataaatccataaaagacttgaca |
298 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||||||||||| ||||||| ||||||| ||| ||||||| ||||| ||||| ||||| |||||| |
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|
| T |
490548 |
aaatcaattttttcatcttttgcagttcattcctgacttttaatt-ttcttttttggtaggttcactatagaagcagataagtccatcaaagatttgaca |
490646 |
T |
|
| Q |
299 |
gtaataagagaatatgttggagatatagactttttaaagaatcgtgaatatgacgacggagataggattatgacacttctttccacatctaatccttcac |
398 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| |||||| | ||| |||| || |||||||| ||||||||||||||||| | ||||||||||||| |
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|
| T |
490647 |
ataataacagaatatgttggagatgtagactttttgaagaatagggaacatgatgatggagatagcattatgacacttctttctgcttctaatccttcac |
490746 |
T |
|
| Q |
399 |
aatcactggtcgtctttccagataaatgtagcaacatagcacctttcatt |
448 |
Q |
| |
|
| ||||||||| ||| ||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
490747 |
agtcactggtcatctgcccagataaacgtagcaatatagcacgtttcatt |
490796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 502032 - 502478
Alignment:
| Q |
18 |
cacagatgtttataactgtagttgttttatgcatttagatttgatgcaagtttgtatatct------catgtcttatcgaaagaagactttgagactcta |
111 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||| || || ||||| ||||||| | || ||||| |
|
|
| T |
502032 |
cacagatgtttataaccattgttgttatatgcatttagatttgatgcctgtttgtatatctttttctcaggtattatcaaaagaaggcaccaaggctcta |
502131 |
T |
|
| Q |
112 |
aacttgagcagaagtatgatggaaagaggagaatgtccgctcctcatggttgtttttgatcatgcagaagggtaagtacttatgc------aactcgcat |
205 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||| | ||||||| |||| |||| |
|
|
| T |
502132 |
aacttgtgcacagatatgatggaaagaggagaatgtccacccctcatggttgtttatgatccgctggaagggtaactgcttatgcaacaaaaactggcat |
502231 |
T |
|
| Q |
206 |
caaaattttcatcttttgcactccattcctgacttttaa-tcgttcttttgtaggtttactgtagaagcggataaatccataaaagacttgacagtaata |
304 |
Q |
| |
|
||| ||||| |||||||||| | ||||||| || || | |||||||| |||| |||||||||||| |||||| ||||| ||| |||||| ||||| |
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|
| T |
502232 |
caactttttcccgttttgcactctaatcctgacattaaatttcttcttttgcaggtatactgtagaagctgataaacccatagaagctttgacaataata |
502331 |
T |
|
| Q |
305 |
agagaatatgttggagatatagactttttaaagaatcgtgaatatgacgacg-ga--gataggattatgacacttctttccacatctaatccttcacaat |
401 |
Q |
| |
|
||||||||| |||||| | |||| |||||||||| ||| |||| || | || |||| || ||||||||||||| | ||| |||||||||||| |
|
|
| T |
502332 |
gcagaatatgtgggagatgtggactacctaaagaatcgggaagatgatgaggtgaataatagcatgatgacacttctttatgcttctgatccttcacaat |
502431 |
T |
|
| Q |
402 |
cactggtcgtctttccagataaatgtagcaacatagcacctttcatt |
448 |
Q |
| |
|
| ||| || ||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
502432 |
cgctgatcatctgcccagataaacgtagcaacatagcacgtttcatt |
502478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 263 - 445
Target Start/End: Original strand, 494289 - 494469
Alignment:
| Q |
263 |
actgtagaagcggataaatccataaaagacttgacagtaataagagaatatgttggagatatagactttttaaagaatcgtgaatatgacgacggagata |
362 |
Q |
| |
|
||||||||||| |||||||| |||||||| | |||| |||||| |||||||||||||||| ||||||||||| |||||| ||||||||| | || |||| |
|
|
| T |
494289 |
actgtagaagctgataaatctataaaagaatcgacaataataacagaatatgttggagatgtagactttttagtgaatcgggaatatgacaatggtgata |
494388 |
T |
|
| Q |
363 |
ggattatgacacttctttccacatctaatccttcacaatcactggtcgtctttccagataaatgtagcaacatagcacctttc |
445 |
Q |
| |
|
| ||||||||| ||||||| | |||| || | ||||| |||||| ||| ||||||||| ||||||||||| ||| |||| |
|
|
| T |
494389 |
gcattatgacatttctttctgcttcta--ccctttcaatcgctggtcatctgcccagataaacgtagcaacatatcacgtttc |
494469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 494142 - 494281
Alignment:
| Q |
18 |
cacagatgtttataactgtagttgttttatgcatttagatttgatgcaagtttgtatatctcatgt-ctta-------tcgaaagaagactttgagactc |
109 |
Q |
| |
|
||||||||||||| ||| | |||||| ||||| ||||||||||||||| ||||||||||||| | | |||| || ||||||||| || ||| |
|
|
| T |
494142 |
cacagatgtttattactattgttgttatatgcttttagatttgatgcatgtttgtatatctctttttcttagatgttttcaaaagaagacaccaaggctc |
494241 |
T |
|
| Q |
110 |
taaacttgagcagaagtatgatggaaagaggagaatgtcc |
149 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
494242 |
taaacttgtgcaggcgtatgatggaaagaggagaatgtcc |
494281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 493189 - 493234
Alignment:
| Q |
15 |
gagcacagatgtttataactgtagttgttttatgcatttagatttg |
60 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
493189 |
gagcacagatgtttataactcctgttgtttcatgcatttagatttg |
493234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 19145571 - 19145126
Alignment:
| Q |
19 |
acagatgtttataactgtagttgttttatgcatttagatttgatgcaagtttgtatatct------catgtcttatcgaaagaagactttgagactctaa |
112 |
Q |
| |
|
||||||||||||||| | |||||| ||||||||||||||||||| || | ||||||| || || ||||| ||||||| | ||| ||| || |
|
|
| T |
19145571 |
acagatgtttataaccattgttgttatatgcatttagatttgatgtctgtctctatatctttttctcaggtattatcaaaagaaggcaccgagtctcaaa |
19145472 |
T |
|
| Q |
113 |
acttgagcagaagtatgatggaaagaggagaatgtccgctcctcatggttgtttttgatcatgcagaagggtaagtacttatgc------aactcgcatc |
206 |
Q |
| |
|
||||| ||| | ||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||| |||||| |||| | ||| |
|
|
| T |
19145471 |
acttgtgcacacgtatgatggaaagaggagaatgtccacccctcatggttgtttatgatccgctggaagggtaagtgattatgcaacaaaaactggtatc |
19145372 |
T |
|
| Q |
207 |
aaaattttcatcttttgcactccattcctgacttttaa-tcgttcttttgtaggtttactgtagaagcggataaatccataaaagacttgacagtaataa |
305 |
Q |
| |
|
| ||||| |||||||||| | ||||||| || || | |||||||| |||||||| |||||||| ||| || ||||| ||| |||||| ||||| |
|
|
| T |
19145371 |
acctttttcccgttttgcactctaatcctgacattaaatttcttcttttgcaggtttaccgtagaagctgatgaacccatagaagctttgacaataatag |
19145272 |
T |
|
| Q |
306 |
gagaatatgttggagatatagactttttaaagaatcgtgaatatgacgacgg---agataggattatgacacttctttccacatctaatccttcacaatc |
402 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||| ||| |||| || || ||| || ||||||||||||| | | | ||||||||||||| |
|
|
| T |
19145271 |
cagaatatgttggagatgtggactacgtaaagaatcgggaaaatgatgaggggaataataacatgatgacacttctttatgcttttgatccttcacaatc |
19145172 |
T |
|
| Q |
403 |
actggtcgtctttccagataaatgtagcaacatagcacctttcatt |
448 |
Q |
| |
|
||| || ||| ||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
19145171 |
gctgatcatctgcccaaataaacgtagcaacatagcacatttcatt |
19145126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 448
Target Start/End: Complemental strand, 19124584 - 19124133
Alignment:
| Q |
15 |
gagcacagatgtttataactgtagttgttttatgcatttagatttgatgcaagtttgtata------tctcatgtcttatcgaaagaagactttgagact |
108 |
Q |
| |
|
||||||||||||||||||| | |||||| ||||||||||||||| |||| || |||||| ||||| | | ||| ||||||| | ||| || |
|
|
| T |
19124584 |
gagcacagatgtttataaccattgttgttatatgcatttagatttaatgcctgtctgtatatctttttctcagatatcatcaaaagaaggcaccgagtct |
19124485 |
T |
|
| Q |
109 |
ctaaacttgagcagaagtatgatggaaagaggag---aatgtccgctcctcatggttgtttttgatcatgcagaagggtaagtacttatgc------aac |
199 |
Q |
| |
|
| ||||||| ||| | ||||| |||||||||||| ||||||| | |||||||||||||| ||||| ||||||||||| |||||| ||| |
|
|
| T |
19124484 |
caaaacttgtgcacacgtatggtggaaagaggagaataatgtccacccctcatggttgtttatgatccgctggaagggtaagtgattatgcaacaaaaac |
19124385 |
T |
|
| Q |
200 |
tcgcatcaaaattttcatcttttgcactccattcctgacttttaatcgttcttttgtaggtttactgtagaagcggataaatccataaaagacttgacag |
299 |
Q |
| |
|
| ||||||| ||||| |||||||||| | |||| || | || | |||||| | |||||||||||||||| ||| || ||||||||| |||||| |
|
|
| T |
19124384 |
tggcatcaactttttctcgttttgcactctaatcctaacatatatttcttctttcgaaggtttactgtagaagttgatgaacccataaaagctttgacaa |
19124285 |
T |
|
| Q |
300 |
taataagagaatatgttggagatatagactttttaaagaatcgtgaatatgacgacgg---agataggattatgacacttctttccacatctaatccttc |
396 |
Q |
| |
|
||||| |||||||||||||||| | |||| |||||||||| ||| |||| || || ||| || ||| ||||||||| | ||| ||||||| |
|
|
| T |
19124284 |
taatagcagaatatgttggagatgtggactacgtaaagaatcgggaaaatgatgaggggaataataacatgatggcacttctttatgcttctgatccttc |
19124185 |
T |
|
| Q |
397 |
acaatcactggtcgtctttccagataaatgtagcaacatagcacctttcatt |
448 |
Q |
| |
|
|||||| ||| || ||| ||||||||| |||||||| |||||| ||||||| |
|
|
| T |
19124184 |
acaatcgctgatcatctgcccagataaacgtagcaacttagcacatttcatt |
19124133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 19110325 - 19110257
Alignment:
| Q |
248 |
ttcttttgtaggtttactgtagaagcggataaatccataaaagacttgacagtaataagagaatatgtt |
316 |
Q |
| |
|
|||||||| ||||||||||||||||| ||| || ||||| ||| |||||| |||||| |||||||||| |
|
|
| T |
19110325 |
ttcttttgcaggtttactgtagaagctgatgaacccatagaagctttgacaataataacagaatatgtt |
19110257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 8762783 - 8762731
Alignment:
| Q |
329 |
tttttaaagaatcgtgaatatgacgacggagataggattatgacacttctttc |
381 |
Q |
| |
|
||||||| |||||| |||||||| || |||||||| || |||||||||||||| |
|
|
| T |
8762783 |
tttttaaggaatcgggaatatgatgatggagatagcataatgacacttctttc |
8762731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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