View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10496_low_10 (Length: 424)
Name: NF10496_low_10
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 41653275 - 41653669
Alignment:
| Q |
19 |
agccactcccctagtcatgaagaaatcaccagtcccaccaattaccgaaatgtccctagtcttattcatcaaagggtcagcaccagcaaaatttatgcta |
118 |
Q |
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| T |
41653275 |
agccactcccctagtcatgaagaaatcaccagtcccaccaattaccgaaatgtccctagtcttattcatcaaagggtcagcaccagcaaaatttatgcta |
41653374 |
T |
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| Q |
119 |
cccttatgttgagtagagttaaacacaaatgagaaaccaagccaagcagtgaaaatttctttcttatcataaatgtaaaatccttgagcacgaccaattg |
218 |
Q |
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| T |
41653375 |
cccttatgttgagtagagttaaacacaaatgagaaaccaagccaagcagtgaaaatttctttcttatcataaatgtaaaatccttgagcacgaccaattg |
41653474 |
T |
|
| Q |
219 |
ggcgtgagtgtaagttattgtccaaagtgattggatcatcaaaaacaaccaaatcaccaaaatggttttggtttgccaatatggttcggttaccccatgc |
318 |
Q |
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| T |
41653475 |
ggcgtgagtgtaagttattgtccaaagtgattggatcatcaaaaacaaccaaatcaccaaaatggttttggtttgccaatatggttcggttaccccatgc |
41653574 |
T |
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| Q |
319 |
tggtgtgcctacaattgctgatgtagcatttttggagttgtgaccgttgtaaataatgtcatgaaaataaaacactaatctcttgcatggttcat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41653575 |
tggtgtgcctacaattgctgatgtagcatttttggagttgtgaccgttgtaaataatgtcatgaaaataaaacactaatctcttgcatggttcat |
41653669 |
T |
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