View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10496_low_12 (Length: 356)

Name: NF10496_low_12
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10496_low_12
NF10496_low_12
[»] chr5 (4 HSPs)
chr5 (1-342)||(12873745-12874086)
chr5 (44-194)||(14988440-14988590)
chr5 (4-74)||(16056592-16056662)
chr5 (156-190)||(36422835-36422869)
[»] chr6 (9 HSPs)
chr6 (1-342)||(27770895-27771234)
chr6 (4-194)||(24845670-24845860)
chr6 (20-194)||(23389159-23389335)
chr6 (29-196)||(8497752-8497920)
chr6 (3-106)||(24691717-24691820)
chr6 (129-194)||(34416913-34416978)
chr6 (1-56)||(27118799-27118854)
chr6 (138-189)||(32649723-32649774)
chr6 (130-162)||(27119405-27119437)
[»] chr4 (10 HSPs)
chr4 (1-194)||(54568413-54568607)
chr4 (4-194)||(53745287-53745477)
chr4 (4-194)||(22206077-22206268)
chr4 (4-111)||(22209236-22209343)
chr4 (29-194)||(8649653-8649818)
chr4 (29-194)||(8661460-8661625)
chr4 (44-194)||(26626139-26626289)
chr4 (26-115)||(31523645-31523734)
chr4 (130-194)||(50938451-50938515)
chr4 (4-75)||(23137517-23137588)
[»] scaffold0001 (1 HSPs)
scaffold0001 (8-194)||(414352-414537)
[»] chr8 (3 HSPs)
chr8 (1-164)||(8813418-8813583)
chr8 (1-165)||(16468572-16468736)
chr8 (4-93)||(44071388-44071476)
[»] chr2 (4 HSPs)
chr2 (1-190)||(9362021-9362210)
chr2 (8-194)||(5076777-5076964)
chr2 (34-193)||(28495494-28495653)
chr2 (141-191)||(44547168-44547218)
[»] chr7 (6 HSPs)
chr7 (1-171)||(37446805-37446975)
chr7 (129-194)||(16011278-16011343)
chr7 (129-194)||(14591687-14591752)
chr7 (136-194)||(25839415-25839473)
chr7 (1-56)||(25839361-25839416)
chr7 (4-48)||(4656262-4656306)
[»] chr3 (2 HSPs)
chr3 (26-134)||(33367747-33367855)
chr3 (91-186)||(26700988-26701084)
[»] chr1 (5 HSPs)
chr1 (43-194)||(17287964-17288115)
chr1 (26-134)||(49193603-49193711)
chr1 (129-194)||(45237491-45237556)
chr1 (43-124)||(39333049-39333130)
chr1 (1-62)||(45237655-45237716)


Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 12874086 - 12873745
Alignment:
Q  1 agaagaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatag 100  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12874086 agaagaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatag 12873987  T
Q  101 caacaaaatgagatgatagtatacctcagaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgagatgata 200  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12873986 caacaaaatgagatgataatatacctcagaaaaatatttgaactttaatcatcaagatacattacgaaagacttcatgataaacaacatttgagatgata 12873887  T
Q  201 tgtatgctcacaacttttgggtgataatacaggggcatagcatatttccaacatgtgaataccaacattacacaatattacatagatggctgtttattaa 300  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12873886 tgtatgctcacaacttttgggtgataatataggggcatatcatatttccaacatgtgaatactaacattacacaatattacatagatggctgtttattaa 12873787  T
Q  301 tattgctacacaacaatcttacgatagtatcaatatcaaaat 342  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  12873786 tattgctacacaacaatcctacgatagtatcaatatcaaaat 12873745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 14988590 - 14988440
Alignment:
Q  44 agttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaacaaaatgagatgatagtatacctcagaaaaatgtttgaac 143  Q
    ||||||| ||||| ||||||  ||||||||||||||||||||||| |||||||||||||||||||||| | | ||| |||| | | ||||| ||||||||    
T  14988590 agttaatggaagttttataacaatttaaaaatatgttcccttctaagacaacaatagcaacaaaatgaaaaggtagcatacataacaaaaaggtttgaac 14988491  T
Q  144 tttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
     |||| |||||||||||||||  ||||||||| |||| || ||||||||||    
T  14988490 attaaccatcaagatacattatgaaagacttcgtgattaataacatttgag 14988440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 16056592 - 16056662
Alignment:
Q  4 agaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaa 74  Q
    ||||||||| ||||| | ||| || |||||||| ||| ||||||||||||||| ||||||  |||||||||    
T  16056592 agaagttaatcgaatcaatcgcaataatgtaaatatatatagttaatagaagttttataacaatttaaaaa 16056662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 36422835 - 36422869
Alignment:
Q  156 gatacattacaaaagacttcatgataaacaacatt 190  Q
    |||||||||||||| ||||||||||||||||||||    
T  36422835 gatacattacaaaaaacttcatgataaacaacatt 36422869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 27771234 - 27770895
Alignment:
Q  1 agaagaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatag 100  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27771234 agaagaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagtcttataaagatttaaaa-tatgttcccttctacgacaacaatag 27771136  T
Q  101 caacaaaatgagatgatagtatacctcagaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgagatgata 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  27771135 caacaaaatgagatgataatatacctcagaaaaatgtttgaactttaatcatcaagatacattataaaa-acttcatgataaacaacatttgagatgata 27771037  T
Q  201 tgtatgctcacaacttttgggtgataatacaggggcatagcatatttccaacatgtgaataccaacattacacaatattacatagatggctgtttattaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27771036 tgtatgctcacaacttttgggtgataatacaggggcatagcatatttcgaacatgtgaatactaacattacacaatattacatagatggctgtttattaa 27770937  T
Q  301 tattgctacacaacaatcttacgatagtatcaatatcaaaat 342  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  27770936 tattgctacacaacaatcctacgatagtatcaatatcaaaat 27770895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 24845670 - 24845860
Alignment:
Q  4 agaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaa 103  Q
    ||||||||| ||||| ||||| |  |||||||||||| ||||||||||||| | ||| ||  ||||||||||||||||||||||| |||||||| || ||    
T  24845670 agaagttaatcgaatcagtcgcattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaaaaggaa 24845769  T
Q  104 caaaatgagatgatagtatacctcagaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
    |||||| | ||| ||| |||| | | ||||| |||||||| |||| |||||||||||||||| ||||||||| ||||||||||||||||||    
T  24845770 caaaattaaatggtagcatacataacaaaaaggtttgaacattaaccatcaagatacattacgaaagacttcgtgataaacaacatttgag 24845860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 23389335 - 23389159
Alignment:
Q  20 agtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaacaaaatgagatgatag 119  Q
    ||||| || |||||||||||| |||||||| |||||| ||||||  |||||||||||||||||||| || ||||||||||| |||||||||| ||| |||    
T  23389335 agtcgcaataatgtaaacatatatagttaaaagaagttttataacaatttaaaaatatgttcccttataagacaacaatagaaacaaaatgaaatggtag 23389236  T
Q  120 tatac--ctcagaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
     ||||   | | |||||||||||||| |||| |||||||||||||| | ||||||||| ||||||||||||||||||    
T  23389235 catacatataacaaaaatgtttgaacattaaccatcaagatacattgcgaaagacttcgtgataaacaacatttgag 23389159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 8497752 - 8497920
Alignment:
Q  29 aatgtaaacataaatagttaatagaagtcttataa-agatttaaaaatatgttcccttctacgacaacaatagcaacaaaatgagatgatagtatacctc 127  Q
    |||||||| ||| ||| || |||||||| |||||  || ||||||||||||||| |||||| |||||||||||||||||||||| ||| ||| |||  |     
T  8497752 aatgtaaatatatataattgatagaagttttatatcagttttaaaaatatgttcacttctaagacaacaatagcaacaaaatgaaatggtagcatagata 8497851  T
Q  128 agaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgagat 196  Q
    | ||||| |||||||| ||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  8497852 acaaaaaggtttgaacattaattatcaagatatattacgaaagacttcgtgataaacaacatttgagat 8497920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 24691820 - 24691717
Alignment:
Q  3 aagaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagca 102  Q
    ||||| |||||| ||||||||| |||||||| |||||| |||||||||||||||| |||||| ||||||||| |||||| ||||| | ||||| ||| ||    
T  24691820 aagaacttaaacaaataagtcgcaacaatgtgaacatatatagttaatagaagtcatataaaaatttaaaaacatgttcacttctgcaacaaccatacca 24691721  T
Q  103 acaa 106  Q
    ||||    
T  24691720 acaa 24691717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 34416913 - 34416978
Alignment:
Q  129 gaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
    |||||||| |||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||    
T  34416913 gaaaaatgattgaacttgaatgatcaagatacattacgaaagacttcgtgataaacaacatttgag 34416978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 27118799 - 27118854
Alignment:
Q  1 agaagaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagt 56  Q
    |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||    
T  27118799 agaagaagttaaacgaatgagtcgcaacaatgtaaacatatatagttaatagaagt 27118854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 32649774 - 32649723
Alignment:
Q  138 ttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacat 189  Q
    ||||| |||||||||||||||||||||  ||| |||| ||||||||||||||    
T  32649774 ttgaattttaatcatcaagatacattatgaaatactttatgataaacaacat 32649723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 27119405 - 27119437
Alignment:
Q  130 aaaaatgtttgaactttaatcatcaagatacat 162  Q
    ||||| |||||||||||||||||||||||||||    
T  27119405 aaaaaggtttgaactttaatcatcaagatacat 27119437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 6e-56; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 54568413 - 54568607
Alignment:
Q  1 agaagaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatag 100  Q
    |||||||||||||||||||||||  |||| |||||||||| ||||||||||||||| |||  || ||||||||| |||||||||||||||||||||||||    
T  54568413 agaagaagttaaacgaataagtcacaacactgtaaacatatatagttaatagaagttttaacaaaatttaaaaacatgttcccttctacgacaacaatag 54568512  T
Q  101 caacaaaatgagatgatagtatacct-cagaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
    ||||||||||| ||| ||| |||| |  | ||||| || ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  54568513 caacaaaatgaaatggtagcatacataaaaaaaaaagtgtgaactttaatcatcaagatacattacgaaagacttcgtgataaacaacatttgag 54568607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 53745287 - 53745477
Alignment:
Q  4 agaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaa 103  Q
    ||||||||| | ||| ||||| |  |||||||| ||| ||||||||||||| | ||| ||  ||||||||||||||||||||||| ||||||||||| ||    
T  53745287 agaagttaatcaaatcagtcgcattaatgtaaatatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaa 53745386  T
Q  104 caaaatgagatgatagtatacctcagaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
    |||||| | ||| ||| |||| | | ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  53745387 caaaattaaatggtagcatacataacaaaaaggtttgaacattaatcatcaagatacattacgaaagacttcgtgataaacaacatttgag 53745477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 22206268 - 22206077
Alignment:
Q  4 agaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataa-agatttaaaaatatgttcccttctacgacaacaatagca 102  Q
    |||| |||| ||||| | ||| || |||||||||||| |||||| |||||||| | |||  || ||||||||||||||| ||||||  || |||||||||    
T  22206268 agaaattaatcgaatcaatcgcaataatgtaaacatatatagttgatagaagtttcatatcagttttaaaaatatgttcacttctaatactacaatagca 22206169  T
Q  103 acaaaatgagatgatagtatacctcagaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
    ||||||||| ||| ||| |||| | | ||||| |||| ||| |||| |||||||||||||||| ||||||||| ||||||||||||||||||    
T  22206168 acaaaatgaaatggtagcatacataacaaaaaggtttcaacattaaccatcaagatacattacgaaagacttcgtgataaacaacatttgag 22206077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 22209343 - 22209236
Alignment:
Q  4 agaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaa 103  Q
    ||||||||| ||||| ||||| || |||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||| ||||||||||||||    
T  22209343 agaagttaatcgaatcagtcgcaaaaatgtaaacatatatagttaatagaagttttataacaatttaaaaatatgttcccttctaagacaacaatagcaa 22209244  T
Q  104 caaaatga 111  Q
    ||||||||    
T  22209243 caaaatga 22209236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 8649653 - 8649818
Alignment:
Q  29 aatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaacaaaatgagatgatagtatacctca 128  Q
    |||||||||||| ||||||||||||| | ||| ||  ||||||||||||||||||||||| ||||| ||  | || ||||| | ||| ||| |||| | |    
T  8649653 aatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaaaaaaggaaaaaaaattaaatggtagcatacataa 8649752  T
Q  129 gaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
     ||||| |||||||| |||| |||||||||||||||| ||||||||| ||||||||||||||||||    
T  8649753 caaaaaggtttgaacattaaccatcaagatacattacgaaagacttcgtgataaacaacatttgag 8649818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 8661460 - 8661625
Alignment:
Q  29 aatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaacaaaatgagatgatagtatacctca 128  Q
    |||||||||||| ||||||||||||| | ||| ||  ||||||||||||||||||||||| ||||| ||  | || ||||| | ||| ||| |||| | |    
T  8661460 aatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaaaaaaggaaaaaaaattaaatggtagcatacataa 8661559  T
Q  129 gaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
     ||||| |||||||| |||| |||||||||||||||| ||||||||| ||||||||||||||||||    
T  8661560 caaaaaggtttgaacattaaccatcaagatacattacgaaagacttcgtgataaacaacatttgag 8661625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 26626139 - 26626289
Alignment:
Q  44 agttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaacaaaatgagatgatagtatacctcagaaaaatgtttgaac 143  Q
    ||||||||||||| |||||   ||||||||||||||||||| ||| |||||||||| || |||||||| ||| ||| |||| | | |||||  |||||||    
T  26626139 agttaatagaagttttatagcaatttaaaaatatgttccctcctaagacaacaataacagcaaaatgaaatggtagcatacataacaaaaagttttgaac 26626238  T
Q  144 tttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
     |||| |||||||||||||||| ||| ||||| | ||||||||||||||||    
T  26626239 attaaccatcaagatacattacgaaaaacttcgtaataaacaacatttgag 26626289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 31523645 - 31523734
Alignment:
Q  26 aacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaacaaaatgagatg 115  Q
    ||||||||||||||| |||||||||| |||| ||||||| || ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  31523645 aacaatgtaaacatatatagttaataaaagttttataaaaatataaaaatatgttcccttctactacaacaatagcaataaaatgagatg 31523734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 50938451 - 50938515
Alignment:
Q  130 aaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
    ||||| |||||||| |||| ||| |||||||||||| ||||| |||||||||||||| |||||||    
T  50938451 aaaaaggtttgaacattaaccattaagatacattacgaaagaattcatgataaacaatatttgag 50938515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 23137517 - 23137588
Alignment:
Q  4 agaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaat 75  Q
    ||||||||| ||||| | ||| || |||||||| ||| ||||||||||||||| ||||||  ||||||||||    
T  23137517 agaagttaatcgaattaatcgcaataatgtaaatatatatagttaatagaagttttataacaatttaaaaat 23137588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 414537 - 414352
Alignment:
Q  8 gttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaacaaa 107  Q
    ||||||||||||||||| | ||||||||||||| |||||| |||||| | |||  || ||||||| ||||||||||||||||||||||||||| ||||||    
T  414537 gttaaacgaataagtcgtagcaatgtaaacatatatagttgatagaaattttaacaacatttaaacatatgttcccttctacgacaacaatagaaacaaa 414438  T
Q  108 atgagatgatagtatacctcagaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
    |||| ||| ||| |||| | | ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  414437 atgaaatggtagcatacat-aaaaaaaggtttgaactttaatcatcaagatacattaccaaagacttcgtgataaacaacatttgag 414352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 8813583 - 8813418
Alignment:
Q  1 agaagaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatag 100  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||  || |||||||||||||||||||||||||||||||||||    
T  8813583 agaagaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagttttaacaaaatttaaaaatatgttcccttctacgacaacaatag 8813484  T
Q  101 caacaaaatgagatgatagtatacct--cagaaaaatgtttgaactttaatcatcaagatacatta 164  Q
    ||||||| ||| ||| ||| |||| |   | ||||| |||||||||||||||||||||||||||||    
T  8813483 caacaaattgaaatggtagcatacataaaaaaaaaaggtttgaactttaatcatcaagatacatta 8813418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 16468572 - 16468736
Alignment:
Q  1 agaagaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatag 100  Q
    ||||||| |||||||||||||| | || |||||||| ||| |||||||||||||||| ||||||   | ||||| |||||| ||| ||||| ||| |||     
T  16468572 agaagaatttaaacgaataagttgcaataatgtaaatatatatagttaatagaagtcatataaaacctaaaaaacatgttcacttatacgataaccataa 16468671  T
Q  101 caacaaaatgagatgatagtatacctcagaaaaatgtttgaactttaatcatcaagatacattac 165  Q
    ||||||||  ||||||||| ||||    |||||| | |||||||||||||||||||||| |||||    
T  16468672 caacaaaaatagatgatagaatacacatgaaaaagggttgaactttaatcatcaagatatattac 16468736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 44071388 - 44071476
Alignment:
Q  4 agaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgaca 93  Q
    ||||||||| |||||  |||| || |||||||||||| ||| ||||||||||| ||||||  |||| |||||||||||||||||| ||||    
T  44071388 agaagttaatcgaattggtcgcaaaaatgtaaacatatataattaatagaagttttataacaattt-aaaatatgttcccttctaagaca 44071476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 9362210 - 9362021
Alignment:
Q  1 agaagaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatag 100  Q
    |||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||| |||||| ||| ||||| |||||| ||| ||| | ||| |||     
T  9362210 agaagaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagtcatataaaaattaaaaaacatgttcacttatacaataaccataa 9362111  T
Q  101 caacaaaatgagatgatagtatacctcagaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatt 190  Q
    ||||||||  ||||||||| |||| |  |||||| |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  9362110 caacaaaaatagatgatagaatacatatgaaaaaggtttgaactttaatcatcaagatatattacgaaagacttcgtgataaacaacatt 9362021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 5076964 - 5076777
Alignment:
Q  8 gttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaacaaa 107  Q
    ||||||| | ||||||| | ||||||||||||| |||||| |||||| | |||  || ||||||| ||||||||||||||||||||||||||| ||||||    
T  5076964 gttaaacaattaagtcgcagcaatgtaaacatatatagttgatagaaattttaacaacatttaaacatatgttcccttctacgacaacaatagaaacaaa 5076865  T
Q  108 a-tgagatgatagtatacctcagaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
    | ||| | | ||| |||| | | ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  5076864 aatgaaacggtagcatacataaaaaaaaagtttgaactttaatcatcaagatacattacgaaagacttcgtgataaacaacatttgag 5076777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 28495494 - 28495653
Alignment:
Q  34 aaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaacaaaatgagatgatagtatacctcagaaaa 133  Q
    |||||||  |||||||||||| | |||||   ||||||||||||||||||| ||| ||||||||||||| |||||||| ||| ||| |||| | | ||||    
T  28495494 aaacatatttagttaatagaaattttatagcaatttaaaaatatgttccctcctaagacaacaatagcagcaaaatgaaatggtagcatacataacaaaa 28495593  T
Q  134 atgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttga 193  Q
    |  ||||||| |||| |||||||||||||||| ||||||||| |||||||||||||||||    
T  28495594 agttttgaacattaaccatcaagatacattacgaaagacttcgtgataaacaacatttga 28495653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 44547218 - 44547168
Alignment:
Q  141 aactttaatcatcaagatacattacaaaagacttcatgataaacaacattt 191  Q
    ||||||||||||||  ||||||||| ||| ||||||||||| |||||||||    
T  44547218 aactttaatcatcatcatacattacgaaatacttcatgatatacaacattt 44547168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 37446805 - 37446975
Alignment:
Q  1 agaagaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatag 100  Q
    |||||||||||||||||||||||| ||||||||||||||| || |||||||||||| |||  ||  ||||||||||||||||||||||||||||||||||    
T  37446805 agaagaagttaaacgaataagtcgcaacaatgtaaacatatatcgttaatagaagttttaacaaattttaaaaatatgttcccttctacgacaacaatag 37446904  T
Q  101 caacaaaatgagatgatagtatacctcagaaaaatgtttgaactttaatcatcaagatacattacaaaaga 171  Q
    ||||||||||  ||| ||| |||| | | ||||  ||||||||||||||| |||||||||||||| |||||    
T  37446905 caacaaaatggaatggtagcatacataaaaaaatggtttgaactttaatcctcaagatacattacgaaaga 37446975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 16011343 - 16011278
Alignment:
Q  129 gaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
    |||||| | |||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  16011343 gaaaaaagattgaacttcaatgatcaagatacattacgaaagacttcatgataaacaacatttgag 16011278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 14591752 - 14591687
Alignment:
Q  129 gaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
    |||||| | |||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||    
T  14591752 gaaaaaagattgaacttgaatgatcaagatacattacgaaagacttcgtgataaacaacatttgag 14591687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 25839415 - 25839473
Alignment:
Q  136 gtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
    |||| |||||||||| |||| ||||||||  ||||||||| ||||||||||||||||||    
T  25839415 gttttaactttaatcgtcaaaatacattatgaaagacttcgtgataaacaacatttgag 25839473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 25839361 - 25839416
Alignment:
Q  1 agaagaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagt 56  Q
    |||||||||||||  ||||||||| || |||||||||||| |||||| ||||||||    
T  25839361 agaagaagttaaataaataagtcgcaataatgtaaacatatatagttgatagaagt 25839416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 4656262 - 4656306
Alignment:
Q  4 agaagttaaacgaataagtcgaaacaatgtaaacataaatagtta 48  Q
    ||||||||||||||||| ||| |||||| |||||||| |||||||    
T  4656262 agaagttaaacgaataattcgcaacaatttaaacatatatagtta 4656306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 33367855 - 33367747
Alignment:
Q  26 aacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaacaaaatgagatgatagtatacc 125  Q
    ||||||||||||||| |||||||||| |||| ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||     
T  33367855 aacaatgtaaacatatatagttaataaaagttttataaaaatataaaaatatgttcccttctactacaacaatagcaacaaaatgagatggtagcataca 33367756  T
Q  126 tcagaaaaa 134  Q
    | |||||||    
T  33367755 taagaaaaa 33367747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 26700988 - 26701084
Alignment:
Q  91 acaacaatagcaacaaaatgagatgatagtatacctcagaaaaatg-tttgaactttaatcatcaagatacattacaaaagacttcatgataaacaa 186  Q
    ||||||||| ||||||||||| ||| ||| |||| | | ||||| | ||||||||||||||||||| ||||||||| |||| |||| ||||||||||    
T  26700988 acaacaataacaacaaaatgaaatggtagcatacataaaaaaaaaggtttgaactttaatcatcaatatacattacgaaaggcttcgtgataaacaa 26701084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 43 - 194
Target Start/End: Complemental strand, 17288115 - 17287964
Alignment:
Q  43 tagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaacaaaatgagatgatagtatacctcagaaaaatgtttgaa 142  Q
    |||||||||||||| |||||   ||||||||||||||||||| ||| ||||||||||||| |||||||| ||| ||| |||  | | |||||  ||||||    
T  17288115 tagttaatagaagttttatagcaatttaaaaatatgttccctcctaagacaacaatagcagcaaaatgaaatggtagcatatataacaaaaagttttgaa 17288016  T
Q  143 ctttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
    | |||| |||||| ||||||||| ||||||||| ||||||||||||||||||    
T  17288015 cattaaccatcaaaatacattacgaaagacttcgtgataaacaacatttgag 17287964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 49193603 - 49193711
Alignment:
Q  26 aacaatgtaaacataaatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaacaaaatgagatgatagtatacc 125  Q
    ||||||||||||||| |||||||||| |||| ||||||| || |||||||| |||||||||||| ||||||||||||||||||||||||| ||| ||||     
T  49193603 aacaatgtaaacatatatagttaataaaagttttataaaaatataaaaataagttcccttctactacaacaatagcaacaaaatgagatggtagcataca 49193702  T
Q  126 tcagaaaaa 134  Q
    | |||||||    
T  49193703 taagaaaaa 49193711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 45237556 - 45237491
Alignment:
Q  129 gaaaaatgtttgaactttaatcatcaagatacattacaaaagacttcatgataaacaacatttgag 194  Q
    |||||| | |||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  45237556 gaaaaagggttgaactttaatcatcaagatatattacgaaagacttcgtgataaacaacatttgag 45237491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 39333049 - 39333130
Alignment:
Q  43 tagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaacaaaatgagatgatagtatac 124  Q
    ||||| |||||||| |||||   ||||||||||||||||||||||| ||||||||||||| |||||||| ||| ||| ||||    
T  39333049 tagttgatagaagttttatagcaatttaaaaatatgttcccttctaagacaacaatagcagcaaaatgaaatggtagcatac 39333130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 45237716 - 45237655
Alignment:
Q  1 agaagaagttaaacgaataagtcgaaacaatgtaaacataaatagttaatagaagtcttata 62  Q
    |||||||||||||||||||||||| || |||||||| ||| ||||| |||||||||| ||||    
T  45237716 agaagaagttaaacgaataagtcgcaataatgtaaatatatatagtaaatagaagtcatata 45237655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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