View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10496_low_13 (Length: 355)
Name: NF10496_low_13
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 9e-95; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 16499103 - 16498920
Alignment:
| Q |
3 |
gaacaccgttgatttgaacaaacataacgcaactgttgcacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgcgtgactcctgacatg |
102 |
Q |
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| T |
16499103 |
gaacaccgttgatttgaacaaacataacgcaactgttgcacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgcgtgactcctgacatg |
16499004 |
T |
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| Q |
103 |
ctttaaatgttgggaactaatcatcaagtgataatgaatttcttccatttcaatgtatgagttttatgagaaatcaattgttag |
186 |
Q |
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| T |
16499003 |
ctttaaatgttggaaactaatcatcaagtgatgatgaatttcttccatttcaatgtatgagttttatgagaaatcaattgttag |
16498920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 16493724 - 16493641
Alignment:
| Q |
3 |
gaacaccgttgatttgaacaaacataacgcaactgttgcacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcg |
86 |
Q |
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| T |
16493724 |
gaacaccgttgatttgaacaagcataacgcaactgttgcacgcatcacagaacttaaaatggagagaagtcttcgtctgcttcg |
16493641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 16471242 - 16471149
Alignment:
| Q |
13 |
gatttgaacaaacataacgcaactgttgcacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgcgtgactcctgacatgcttt |
106 |
Q |
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| T |
16471242 |
gatttgaacaactataaagcaactgttaaacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgcttgtcacctgatatgcttt |
16471149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 16464220 - 16464146
Alignment:
| Q |
13 |
gatttgaacaaacataacgcaactgttgcacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgc |
87 |
Q |
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| T |
16464220 |
gatttgaacaactataatgcaactgttaaacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgc |
16464146 |
T |
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