View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10496_low_14 (Length: 330)
Name: NF10496_low_14
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 45386515 - 45386762
Alignment:
| Q |
19 |
ctcaggagcaattgggatcggagaaagaagctcaaccttcctgtgactcttcttcttaaccctctccaaaaccttcaatggctctgctttctctcctttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45386515 |
ctcaggagcaattgggatcggagaaagaagctcaaccttcctgtgactcttcttctgaaccctctccaaaaccttcaatggctctgctttctctcctttc |
45386614 |
T |
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| Q |
119 |
acaaccaccatatgagatttgcaatcagttatcacttcttcaacacctggaaaatctttcaatgaccgacgaactttccgagcacagccttcacaatgca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45386615 |
acaaccaccatatgagatttgcaatcagttatcacttcttcaacacctggaaaatctttcaatgaccgacgaactttccgagcacagccttcacaatgca |
45386714 |
T |
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| Q |
219 |
tgaaaattctcagcaaaatctctgctggaggcggtggagttgcagcag |
266 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45386715 |
tgaaaactctcagcaaaatctctgctggaggcggtggagttgcagcag |
45386762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 45390884 - 45391114
Alignment:
| Q |
19 |
ctcaggagcaattgggatcggagaaagaagctcaaccttcctgtgactcttcttcttaaccctctccaaaaccttcaatggctctgctttctctcctttc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
45390884 |
ctcaggagcaattgggatcggagaaagaagctcaacctttctatgactcttcttctgaaccctttccaaaaccttcaatggctccgctttctctcctttc |
45390983 |
T |
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| Q |
119 |
acaaccaccatatgagatttgcaatcagttatcacttcttcaacacctggaaaatctttcaatgaccgacgaactttccgagcacagccttcacaatgca |
218 |
Q |
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| T |
45390984 |
acaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacgaccgacgaactttccgagcacagctttcacaatgca |
45391083 |
T |
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| Q |
219 |
tgaaaattctcagcaaaatctctgctggagg |
249 |
Q |
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|||||| | |||||||||||||||| ||||| |
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| T |
45391084 |
tgaaaactttcagcaaaatctctgccggagg |
45391114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 734492 - 734722
Alignment:
| Q |
19 |
ctcaggagcaattgggatcggagaaagaagctcaaccttcctgtgactcttcttcttaaccctctccaaaaccttcaatggctctgctttctctcctttc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
734492 |
ctcaggagcaattgggatcggagaaagaagctcaaccttcctatgactcttcttctgaaccctttccaaaaccttcaatggctccgctttctctcctttc |
734591 |
T |
|
| Q |
119 |
acaaccaccatatgagatttgcaatcagttatcacttcttcaacacctggaaaatctttcaatgaccgacgaactttccgagcacagccttcacaatgca |
218 |
Q |
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||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
734592 |
acaaccaccgtatgagacttgcaatcagctatcacttcttcaacacctggaaaatctttcaacgaccgacgaactttccgagcacagctttcacaatgca |
734691 |
T |
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| Q |
219 |
tgaaaattctcagcaaaatctctgctggagg |
249 |
Q |
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|||||| | |||||||||||||||| ||||| |
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| T |
734692 |
tgaaaactttcagcaaaatctctgccggagg |
734722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 174
Target Start/End: Original strand, 40577944 - 40578088
Alignment:
| Q |
30 |
ttgggatcggagaaagaagctcaaccttcctgtgactcttcttcttaaccctctccaaaaccttcaatggctctgctttctctcctttcacaaccaccat |
129 |
Q |
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||||||||||||||||||||||||| | || ||||||||| ||| ||| || || | |||||||||||| || ||||| |||||||| |||| ||| | |
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| T |
40577944 |
ttgggatcggagaaagaagctcaacttgtctatgactcttcctctgaactctttcaagaaccttcaatggatccgctttttctcctttaacaataacctt |
40578043 |
T |
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| Q |
130 |
atgagatttgcaatcagttatcacttcttcaacacctggaaaatc |
174 |
Q |
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||||||||||||||||| | ||| |||||||| |||| |||||| |
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| T |
40578044 |
gtgagatttgcaatcagtaaccacatcttcaacccctgaaaaatc |
40578088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 40578165 - 40578224
Alignment:
| Q |
163 |
acctggaaaatctttcaatgaccgacgaactttccgagcacagccttcacaatgcatgaa |
222 |
Q |
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|||||||||| |||| | ||| ||||||||||| |||||||| ||||||||||||||||| |
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| T |
40578165 |
acctggaaaacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaa |
40578224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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