View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10496_low_17 (Length: 291)
Name: NF10496_low_17
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 14732027 - 14731754
Alignment:
| Q |
1 |
attacctgacaaatacaaataaaacaagaattaggacaaaacaaaataaatgtcttattttcttatgataaacaaaaaattatgtaagagtggtctaacc |
100 |
Q |
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| T |
14732027 |
attacctgacaaatacaaataaaacaagaattaggacaaaacaaaataaatgtcttattttcttatgataaacaaaaaattatgtaagagtggtctaacc |
14731928 |
T |
|
| Q |
101 |
ttttatacagggcttttacatcttcccctaacaatggactttctagaaacatatcaccacattccttcacatcaactgtctcaacttcaaaagctttgtc |
200 |
Q |
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| T |
14731927 |
ttttatacagggcttttacatcttcccctaacaatggactttctagaaacatatcaccacattccttcacatcaactgtctcaacttcaaaagctttgtc |
14731828 |
T |
|
| Q |
201 |
accacaatattcattccattcaaaccacattttcgaaattaattccttcttgacacaagtactgtgatcttcct |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14731827 |
accacaatattcattccattcaaaccacattttcgaaattaattccttcttgacacaagtactgtgatcttcct |
14731754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 274
Target Start/End: Original strand, 13951782 - 13952049
Alignment:
| Q |
2 |
ttacctgacaaatacaaataaaacaagaattaggacaaaacaaaataaatgtcttattttcttatgataaacaaaaaattatgtaagagtggtctaacct |
101 |
Q |
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||||||||||||||||||||||||||||||||||| || | |||||||| ||||||| ||||||| |||||| || |||| ||||||||||||| |
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| T |
13951782 |
ttacctgacaaatacaaataaaacaagaattaggaaaata-----taaatgtcatattttcgtatgatatgcaaaaaggtaagtaaaagtggtctaacct |
13951876 |
T |
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| Q |
102 |
tttatacagggcttttacatcttcccctaacaatggactttctagaaacatatcaccacattccttcacatcaactgtctcaacttcaaaagctttgtca |
201 |
Q |
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||||||||| |||||||| |||||||||||||| || || |||||||| | |||||||||||| |||||||||| ||| ||||||||||| || |||| |
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| T |
13951877 |
tttatacagagcttttacgtcttcccctaacaacgggctctctagaaatagatcaccacattctttcacatcaagtgtttcaacttcaaatgcacggtca |
13951976 |
T |
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| Q |
202 |
ccacaatattcattccattcaaaccacattttcgaaattaattccttcttgacacaagtactgtgatcttcct |
274 |
Q |
| |
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|||||||||||||||||||||||||||||||| || ||||| |||||||||| ||||||| ||||||||||| |
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| T |
13951977 |
ccacaatattcattccattcaaaccacatttttgagattaactccttcttgaaacaagtatggtgatcttcct |
13952049 |
T |
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