View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10496_low_19 (Length: 271)
Name: NF10496_low_19
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 26096993 - 26096749
Alignment:
| Q |
19 |
caaatttcatattctaagagaatttttgcagttgggatatagtgttcttctttcagacatcgacattgtatatttgcagaatccttttgatcatctatac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096993 |
caaatttcatattctaagagaatttttgcagttgggatatagtgttcttctttcagacatcgacattgtatatttgcagaatccttttgatcatctatac |
26096894 |
T |
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| Q |
119 |
cgtgattcagatgttgagtccatgagtgatggtcatgataacatgacagcttatggttacaacgatgtcttcgacgaccctgggatgggtt-gtctagtg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26096893 |
cgtgattcagatgttgagtccatgagtgatggtcatgataacatgacagcttatggttacaacgatgtcttcgacgaccctgggatgggttggtctagtg |
26096794 |
T |
|
| Q |
218 |
gtgtttataccaggaggatatttgtttacaattgtggtttcttct |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096793 |
gtgtttataccaggaggatatttgtttacaattgtggtttcttct |
26096749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 26120280 - 26120036
Alignment:
| Q |
19 |
caaatttcatattctaagagaatttttgcagttgggatatagtgttcttctttcagacatcgacattgtatatttgcagaatccttttgatcatctatac |
118 |
Q |
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|||||| | |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26120280 |
caaattccgtattctaagagaatttttgcagttgggatacagtgttcttctatcagacatcgatattgtatatttgcagaatccttttgatcatctatac |
26120181 |
T |
|
| Q |
119 |
cgtgattcagatgttgagtccatgagtgatggtcatgataacatgacagcttatggttacaacgatgtcttcgacgaccctgggatgggtt-gtctagtg |
217 |
Q |
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| T |
26120180 |
cgtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggctacaacgatgtcttcaacgaccctgggatgggttggtctagtg |
26120081 |
T |
|
| Q |
218 |
gtgtttataccaggaggatatttgtttacaattgtggtttcttct |
262 |
Q |
| |
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| |||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
26120080 |
gcgtttttaccaggaggatatttgtttacaatgctggtttcttct |
26120036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 26084717 - 26084474
Alignment:
| Q |
20 |
aaatttcatattctaagagaatttttgcagttgggatatagtgttcttctttcagacatcgacattgtatatttgcagaatccttttgatcatctatacc |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26084717 |
aaatttcgtattctaagagaatttttgcagttgggatatagtgttcttctatcagacatcgacattgtatatttgcagaatccttttgatcatttatacc |
26084618 |
T |
|
| Q |
120 |
gtgattcagatgttgagtccatgagtgatggtcatgataacatgacagcttatggttacaacgatgtcttcgacgaccctgggatgggtt-gtctagtgg |
218 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| | |||| ||||||||||| ||||| | |
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| T |
26084617 |
gtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggctacaacgatgtcttcaaagaccatgggatgggttggtctactaa |
26084518 |
T |
|
| Q |
219 |
tgtttataccaggaggatatttgtttacaattgtggtttcttct |
262 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
26084517 |
cgtttataccacgaggatatttgtttacaattctggtttcttct |
26084474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 26126936 - 26126693
Alignment:
| Q |
20 |
aaatttcatattctaagagaatttttgcagttgggatatagtgttcttctttcagacatcgacattgtatatttgcagaatccttttgatcatctatacc |
119 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126936 |
aaatttcgtattttaagagaatttttgcagttgggatatagcgttcttctatcagacatcgacattgtatatttgcagaatccttttgatcatctatacc |
26126837 |
T |
|
| Q |
120 |
gtgattcagatgttgagtccatgagtgatggtcatgataacatgacagcttatggttacaacgatgtcttcgacgaccctgggatgggtt-gtctagtgg |
218 |
Q |
| |
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||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||| ||| |||||||| |||| || |
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| T |
26126836 |
gtgattcggatgtagagtccatgagcgatggtcatgataacatgacagcttatggctttaacgatgtctttgacgaacctctgatgggttggtctcgtat |
26126737 |
T |
|
| Q |
219 |
tgtttataccaggaggatatttgtttacaattgtggtttcttct |
262 |
Q |
| |
|
||| |||| | ||||||| |||||||||| ||||||||||| |
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| T |
26126736 |
cgttcatacaactaggatatgggtttacaattctggtttcttct |
26126693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 26036344 - 26036154
Alignment:
| Q |
20 |
aaatttcatattctaagagaatttttgcagttgggatatagtgttcttctttcagacatcgacattgtatatttgcagaatccttttgatcatctatacc |
119 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||| | |||||| | |||||||||||||| ||||||||||||||||||||||||| |
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| T |
26036344 |
aaatttcgtattctaagagaatttttgcagttgggatatggtgttctcttatcagacgttgacattgtatatttacagaatccttttgatcatctatacc |
26036245 |
T |
|
| Q |
120 |
gtgattcagatgttgagtccatgagtgatggtcatgataacatgacagcttatggttacaacgatgtcttcgacgaccctgggatgggttg |
210 |
Q |
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||||||||||||| ||||||||||||||||| ||| |||||||||||||||| || || ||||||||||||||||| |||| ||||||||| |
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| T |
26036244 |
gtgattcagatgtcgagtccatgagtgatggccataataacatgacagcttacggctataacgatgtcttcgacgaacctgcgatgggttg |
26036154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 26064992 - 26064828
Alignment:
| Q |
20 |
aaatttcatattctaagagaatttttgcagttgggatatagtgttcttctttcagacatcgacattgtatatttgcagaatccttttgatcatctatacc |
119 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||||||| |||||||| ||||||| ||| ||| |||||||||||||||||||||||||| |||||| |
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| T |
26064992 |
aaatttcgtattctaagggaatttttgcagctgggatatagcgttcttctatcagacaccgatattatatatttgcagaatccttttgatcatttatacc |
26064893 |
T |
|
| Q |
120 |
gtgattcagatgttgagtccatgagtgatggtcatgataacatgacagcttatggttacaacgat |
184 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |
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| T |
26064892 |
gtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggctacaacgat |
26064828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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