View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10496_low_2 (Length: 639)
Name: NF10496_low_2
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 577; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Complemental strand, 23324229 - 23323629
Alignment:
| Q |
1 |
atcagctgcaaaaactaatgaacaacctaagtccaatccatttccaagacaagttcatttctggattccaacaagaaaatcctctaatgtttcactcttc |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23324229 |
atcagctgcaaaaactaatgaacaacccaagtccaatccatttccaagacaagttcatttctggattccaacaagaaaatcctctaatgtttcactcttc |
23324130 |
T |
|
| Q |
101 |
aaaccctagcattacagaatctagcagtctctcacacggttctccaccggtcgattcattctttgaaactgtttcttcacctgagttttcaaacaccaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23324129 |
aaaccctagcattacagaatctagcagtctctcacacggttctccaccggtcgattcattctttgaaactgtttcttcacctgagttttcaaacaccaac |
23324030 |
T |
|
| Q |
201 |
atggcctatctcaaccatcatcaaaatcaacacttcaattatttgagggtgcccagtgaaaagccagtttctgatcatggaactgttgctatagattcta |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23324029 |
atggcctatctcaatcatcatcaaaatcaacacttcaattatttgagggtgcccagtgaaaagccagtttctgatcatggaactgttgctatagattcta |
23323930 |
T |
|
| Q |
301 |
ttgctaaagaaaaagttttgcctcaaaagggtaaacttttacaagctgtgattgatgctggtcctttgcttcaaactattctacttgctggaccacttcc |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23323929 |
ttgctaaagaaaaagttttgcctcaaaagggtaaacttttacaagctgtgattgatgctggtcctttgcttcaaactattctacttgctggaccacttcc |
23323830 |
T |
|
| Q |
401 |
tacttggagcaatccacctcctttgaatgatattcaagttccacctttgaacatcaaagtgtatgataatgatgctgctataataatcgatccggtttct |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23323829 |
tacttggagcaatccacctcctttgaatgatattcaagttccacccttgaacatcaaagtgtatgataatgatgctgctataataatcgacccggtttct |
23323730 |
T |
|
| Q |
501 |
tttccagctatgccgaagttttcttcaaatgttacctcaacttgttcagcttcttcaatgcttaactttgctggtaatcttgttcctcatggttcatgga |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
23323729 |
tttccagctatgccgaagttttcttcaaatgttacctcaacttgttcagcttcttcaatgcttaactttgctggtaatcatgtgcctcatggttcatgga |
23323630 |
T |
|
| Q |
601 |
a |
601 |
Q |
| |
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| |
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| T |
23323629 |
a |
23323629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 21010438 - 21010360
Alignment:
| Q |
317 |
tttgcctcaaaagggtaaacttttacaagctgtgattgatgctggtcctttgcttcaaactattctacttgctggacca |
395 |
Q |
| |
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||||||| |||| ||||||||||||||||| ||||| | ||||||||||||||||| || || ||||||| |||||| |
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| T |
21010438 |
tttgcctgaaaaaggtaaacttttacaagcagtgatgaaagctggtcctttgcttcagacccttttacttgcaggacca |
21010360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 426
Target Start/End: Complemental strand, 41159943 - 41159811
Alignment:
| Q |
294 |
gattctattgctaaagaaaaagttttgcctcaaaagggtaaacttttacaagctgtgattgatgctggtcctttgcttcaaactattctacttgctggac |
393 |
Q |
| |
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|||||| |||| | || |||||| || || ||||| ||||||||| | | ||||| ||| |||||||||| |||||||||| | || | ||| | || | |
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| T |
41159943 |
gattctcttgcaagaggaaaagtgttaccacaaaaaggtaaacttcttgatgctgtaattaatgctggtccattgcttcaaaatcttgttctttccgggc |
41159844 |
T |
|
| Q |
394 |
cacttcctacttggagcaatccacctcctttga |
426 |
Q |
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||||||||||||||| |||||||||||||||| |
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| T |
41159843 |
cacttcctacttggaaaaatccacctcctttga |
41159811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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