View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10496_low_20 (Length: 270)
Name: NF10496_low_20
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 36634913 - 36634659
Alignment:
| Q |
1 |
ataggttttactgtaacggaaatataagctgaatttagatgaagcaacaatgaaatttttctagttatacttaccatgttttgagtagtttgcaatgagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36634913 |
ataggttttactgtaacggaaatataagctgaatttagatgaagcaacaatgaaatttttctagttatacttaccatgttttgagtagtttgcaatgagg |
36634814 |
T |
|
| Q |
101 |
tccaattttatggtaaagatatcaacatatgtaacatttagatctagatactggccctgcaattttgcccacaaagcttgcaactgtagattaaaggcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36634813 |
tccaattttatggtaaagatatcaacatatgtaacatttagatctagatactggccctgcaattttgcccacaaagcttgcaactgtagattaaaggcct |
36634714 |
T |
|
| Q |
201 |
tagcagcttggttgtgtgcaccaagacatcctagttcatcaatctttgatttatc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36634713 |
tagcagcttggttgtgtgcaccaagacatcctagttcatcaatctttgatttatc |
36634659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 56 - 242
Target Start/End: Complemental strand, 36639626 - 36639440
Alignment:
| Q |
56 |
tttttctagttatacttaccatgttttgagtagtttgcaatgaggtccaattttatggtaaagatatcaacatatgtaacatttagatctagatactggc |
155 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
36639626 |
ttttgctagatatacttaccatgttgtgagtagtttgcaatgaggtctaattttatggtaaagatatcaacatatgtaacatttacatctggatactggc |
36639527 |
T |
|
| Q |
156 |
cctgcaattttgcccacaaagcttgcaactgtagattaaaggccttagcagcttggttgtgtgcaccaagacatcctagttcatcaa |
242 |
Q |
| |
|
|||||||||| || ||| |||| | | | ||||||| || ||||||||| ||| ||| || |||||||||||||||||||| |
|
|
| T |
36639526 |
cctgcaatttactgcagaaatcttgaagatattgattaaaagctttagcagctaagttatgttaacgaagacatcctagttcatcaa |
36639440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 250
Target Start/End: Original strand, 46937192 - 46937361
Alignment:
| Q |
81 |
ttgagtagtttgcaatgaggtccaattttatggtaaagatatcaacatatgtaacatttagatctagatactggccctgcaattttgcccacaaagcttg |
180 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||| |||| || ||||||||||| |||| ||| || |
|
|
| T |
46937192 |
ttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatg |
46937291 |
T |
|
| Q |
181 |
caactgtagattaaaggccttagcagcttggttgtgtgcaccaagacatcctagttcatcaatctttgat |
250 |
Q |
| |
|
| ||||| ||||||| ||| |||||||||| || ||| || ||||||||||||||||| ||||||| |
|
|
| T |
46937292 |
aagttgtaggttaaaggttttaacagcttggttatgcccactaacacatcctagttcatcaagctttgat |
46937361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University