View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10496_low_28 (Length: 243)
Name: NF10496_low_28
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 48182738 - 48182951
Alignment:
| Q |
21 |
catgccactttgagttgcagggattcacaatggtctacaatgagaagcaccatattgtcggtatatcaaccatcacacctatcaagattagtgccaacaa |
120 |
Q |
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| T |
48182738 |
catgccactttgagttgcagggattcacaatggtctacaatgagaaacaccatattgtcggtatatcaaccatcacacctatcaagattagtgccaacaa |
48182837 |
T |
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| Q |
121 |
tgcaatcattcatagaatctgccactcaaaatcttgactcacaaaaagaagacattttcttttctaatttatcacttaaactcgcgactgacgtgattgg |
220 |
Q |
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| T |
48182838 |
tgcaatcattcatagaatctgccactcaaaatcttgactcacaaaaagaagacattttcttttctaatttatcacttaaactcgcgactgacgtgattgg |
48182937 |
T |
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| Q |
221 |
acaagcagcctttg |
234 |
Q |
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| T |
48182938 |
acaagcagcctttg |
48182951 |
T |
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Back To:
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 4090909 - 4090797
Alignment:
| Q |
45 |
tcacaatggtctacaatgagaagcaccatattgtcggtatatcaaccatcacacctatcaagattagtgccaacaatgcaatcattcatagaatctgcca |
144 |
Q |
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| T |
4090909 |
tcacaatggtctacgatgagaaataccatattatcagtataccaaccatcacacttagccaacttagtgcctaaaatgcaatcatttattgaatcagcaa |
4090810 |
T |
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| Q |
145 |
ctcaaaatcttga |
157 |
Q |
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| T |
4090809 |
cccaaaatcttga |
4090797 |
T |
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