View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10496_low_36 (Length: 218)

Name: NF10496_low_36
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10496_low_36
NF10496_low_36
[»] chr3 (6 HSPs)
chr3 (1-200)||(42545594-42545793)
chr3 (26-115)||(22214661-22214751)
chr3 (86-120)||(2128255-2128289)
chr3 (33-114)||(36646385-36646467)
chr3 (87-120)||(39723237-39723270)
chr3 (86-115)||(40665468-40665497)
[»] chr8 (3 HSPs)
chr8 (51-120)||(14949869-14949939)
chr8 (84-120)||(3254262-3254298)
chr8 (86-120)||(20672789-20672823)
[»] chr6 (8 HSPs)
chr6 (82-120)||(22743516-22743554)
chr6 (85-120)||(4420681-4420716)
chr6 (33-68)||(28088272-28088307)
chr6 (86-120)||(821838-821872)
chr6 (33-67)||(3204593-3204627)
chr6 (87-120)||(696642-696675)
chr6 (33-66)||(29274281-29274314)
chr6 (33-120)||(8035145-8035233)
[»] chr2 (2 HSPs)
chr2 (45-120)||(32821806-32821882)
chr2 (33-74)||(9556224-9556265)
[»] chr1 (9 HSPs)
chr1 (84-121)||(30257720-30257757)
chr1 (86-120)||(4481969-4482003)
chr1 (86-120)||(6292532-6292566)
chr1 (86-120)||(37593681-37593715)
chr1 (38-115)||(50318852-50318930)
chr1 (86-115)||(31517742-31517771)
chr1 (35-68)||(48830126-48830159)
chr1 (84-120)||(4699612-4699648)
chr1 (80-120)||(24460404-24460444)
[»] chr7 (7 HSPs)
chr7 (85-120)||(36598353-36598388)
chr7 (87-120)||(11048067-11048100)
chr7 (33-74)||(21453279-21453320)
chr7 (89-122)||(26333308-26333341)
chr7 (87-120)||(43219641-43219674)
chr7 (85-121)||(9423590-9423626)
chr7 (86-122)||(25130084-25130120)
[»] scaffold0608 (1 HSPs)
scaffold0608 (86-120)||(9634-9668)
[»] chr5 (6 HSPs)
chr5 (86-120)||(17258880-17258914)
chr5 (85-114)||(11615539-11615568)
chr5 (80-120)||(4855731-4855771)
chr5 (85-113)||(12521566-12521594)
chr5 (84-120)||(12595713-12595749)
chr5 (85-113)||(28413288-28413316)
[»] chr4 (6 HSPs)
chr4 (85-122)||(17223031-17223068)
chr4 (38-114)||(45128313-45128390)
chr4 (85-121)||(8469373-8469409)
chr4 (33-73)||(20907332-20907372)
chr4 (86-122)||(25571299-25571335)
chr4 (86-122)||(48719386-48719422)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 42545594 - 42545793
Alignment:
Q  1 aaattaataaacaaagtcaaactgttataagatgttttcatataagctagaaactgttttcataagctctcctaaaatattacagaaataagctgaaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  42545594 aaattaataaacaaagtcaaactgttataagatgttttcatataagctagaaactgttttcataagctctcctagaagattacggaaataagctgaaaac 42545693  T
Q  101 agcttatgaacatgtaataaacagaccctgacgatgcgatctatgcatatattaaacaaataattcacaataaagtacaaattttcaactttaccaaatc 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42545694 agcttatgaacatgtaataaacagaccctaacgatgcgatctatgcatatattaaacaaataattcacaataaagtacaaattttcaactttaccaaatc 42545793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 22214751 - 22214661
Alignment:
Q  26 tataagatgttttcatataagctagaaactgttttcataagctctcctaaa-atattacagaaataagctgaaaacagcttatgaacatgt 115  Q
    |||||| ||||||||||||| ||| ||  |||||||||||||| ||||| | | ||||| |||||||||||||||||||||||| ||||||    
T  22214751 tataagttgttttcatataacctataagttgttttcataagctatcctagagacattacggaaataagctgaaaacagcttatggacatgt 22214661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 2128289 - 2128255
Alignment:
Q  86 aaataagctgaaaacagcttatgaacatgtaataa 120  Q
    |||||||||||||||||||||||||||||| ||||    
T  2128289 aaataagctgaaaacagcttatgaacatgttataa 2128255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 36646467 - 36646385
Alignment:
Q  33 tgttttcatataagctagaaactgttttcataagctctcctaaa-atattacagaaataagctgaaaacagcttatgaacatg 114  Q
    |||||||||||||| || ||  |||||||||||||| ||||| | |  ||| ||||||||| ||||||||||||||| |||||    
T  36646467 tgttttcatataagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggacatg 36646385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 39723270 - 39723237
Alignment:
Q  87 aataagctgaaaacagcttatgaacatgtaataa 120  Q
    ||||||||||||||||||||||||||||| ||||    
T  39723270 aataagctgaaaacagcttatgaacatgtcataa 39723237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 115
Target Start/End: Original strand, 40665468 - 40665497
Alignment:
Q  86 aaataagctgaaaacagcttatgaacatgt 115  Q
    ||||||||||||||||||||||||||||||    
T  40665468 aaataagctgaaaacagcttatgaacatgt 40665497  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 14949869 - 14949939
Alignment:
Q  51 aaactgttttcataagctctcctaaa-atattacagaaataagctgaaaacagcttatgaacatgtaataa 120  Q
    ||||| |||||||||||| ||||||| | |||| ||||||||||||||||||||||||| |||||| ||||    
T  14949869 aaactcttttcataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgtcataa 14949939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 3254262 - 3254298
Alignment:
Q  84 agaaataagctgaaaacagcttatgaacatgtaataa 120  Q
    |||||||||||||||||||||||||||||||| ||||    
T  3254262 agaaataagctgaaaacagcttatgaacatgtcataa 3254298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 20672789 - 20672823
Alignment:
Q  86 aaataagctgaaaacagcttatgaacatgtaataa 120  Q
    |||||||||||||||||||||||||||||| ||||    
T  20672789 aaataagctgaaaacagcttatgaacatgtcataa 20672823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 22743516 - 22743554
Alignment:
Q  82 acagaaataagctgaaaacagcttatgaacatgtaataa 120  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22743516 acagaaataagctgaaaacagcttatgaacatgtaataa 22743554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 4420681 - 4420716
Alignment:
Q  85 gaaataagctgaaaacagcttatgaacatgtaataa 120  Q
    ||||||||||||||||||||||||||||||| ||||    
T  4420681 gaaataagctgaaaacagcttatgaacatgtcataa 4420716  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 28088307 - 28088272
Alignment:
Q  33 tgttttcatataagctagaaactgttttcataagct 68  Q
    ||||||||||||||||| ||||||||||||||||||    
T  28088307 tgttttcatataagctataaactgttttcataagct 28088272  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 821838 - 821872
Alignment:
Q  86 aaataagctgaaaacagcttatgaacatgtaataa 120  Q
    |||||||||||||||||||||||||||||| ||||    
T  821838 aaataagctgaaaacagcttatgaacatgtcataa 821872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 3204627 - 3204593
Alignment:
Q  33 tgttttcatataagctagaaactgttttcataagc 67  Q
    ||||||||||||||||||||| |||||||||||||    
T  3204627 tgttttcatataagctagaaattgttttcataagc 3204593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 696642 - 696675
Alignment:
Q  87 aataagctgaaaacagcttatgaacatgtaataa 120  Q
    ||||||||||||||||||||||||||||| ||||    
T  696642 aataagctgaaaacagcttatgaacatgtcataa 696675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 29274314 - 29274281
Alignment:
Q  33 tgttttcatataagctagaaactgttttcataag 66  Q
    ||||||||||||||||| ||||||||||||||||    
T  29274314 tgttttcatataagctataaactgttttcataag 29274281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 8035233 - 8035145
Alignment:
Q  33 tgttttcatataagctagaaactgttttcataagctctccta-aaatattacagaaataagctgaaaacagcttatgaacatgtaataa 120  Q
    ||||||||||||||||||||  |||||||||||| | ||||| |||  ||||  ||||||| ||||||||  |||||| ||||| ||||    
T  8035233 tgttttcatataagctagaagttgttttcataagttatcctagaaagcttacgaaaataagttgaaaacaagttatgaccatgtcataa 8035145  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 32821806 - 32821882
Alignment:
Q  45 agctagaaactgttttcataagctctcctaaa-atattacagaaataagctgaaaacagcttatgaacatgtaataa 120  Q
    ||||| |||||||||||||||||| ||||||| |  ||| |||||||| |||||||||||||||| |||||| ||||    
T  32821806 agctataaactgttttcataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgtcataa 32821882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 9556224 - 9556265
Alignment:
Q  33 tgttttcatataagctagaaactgttttcataagctctccta 74  Q
    |||||||||| |||||| |||||||||||||||||| |||||    
T  9556224 tgttttcatacaagctataaactgttttcataagctatccta 9556265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 30257720 - 30257757
Alignment:
Q  84 agaaataagctgaaaacagcttatgaacatgtaataaa 121  Q
    |||||||||||||||||||||||||||||||| |||||    
T  30257720 agaaataagctgaaaacagcttatgaacatgtcataaa 30257757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 4481969 - 4482003
Alignment:
Q  86 aaataagctgaaaacagcttatgaacatgtaataa 120  Q
    ||||||||| |||||||||||||||||||||||||    
T  4481969 aaataagctaaaaacagcttatgaacatgtaataa 4482003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 6292532 - 6292566
Alignment:
Q  86 aaataagctgaaaacagcttatgaacatgtaataa 120  Q
    |||||||||||||||||||||||||||||| ||||    
T  6292532 aaataagctgaaaacagcttatgaacatgtcataa 6292566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 37593715 - 37593681
Alignment:
Q  86 aaataagctgaaaacagcttatgaacatgtaataa 120  Q
    |||||||||||||||||||||||||||||| ||||    
T  37593715 aaataagctgaaaacagcttatgaacatgtcataa 37593681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 50318930 - 50318852
Alignment:
Q  38 tcatataagctagaaactgttttcataagctctcctaaa-atattacagaaataagctgaaaacagcttatgaacatgt 115  Q
    |||||||||||| |||||||| ||||||| | ||||||| |  ||| |||||||| ||| |||||| ||||||||||||    
T  50318930 tcatataagctataaactgttctcataagttatcctaaagaggttaaagaaataaactggaaacagtttatgaacatgt 50318852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 115
Target Start/End: Complemental strand, 31517771 - 31517742
Alignment:
Q  86 aaataagctgaaaacagcttatgaacatgt 115  Q
    ||||||||||||||||||||||||||||||    
T  31517771 aaataagctgaaaacagcttatgaacatgt 31517742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 48830159 - 48830126
Alignment:
Q  35 ttttcatataagctagaaactgttttcataagct 68  Q
    ||||||||||||||| ||||||||||||||||||    
T  48830159 ttttcatataagctataaactgttttcataagct 48830126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 4699648 - 4699612
Alignment:
Q  84 agaaataagctgaaaacagcttatgaacatgtaataa 120  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  4699648 agaaataagctaaaaacagcttatgaacatgtcataa 4699612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 24460444 - 24460404
Alignment:
Q  80 ttacagaaataagctgaaaacagcttatgaacatgtaataa 120  Q
    ||||| |||||||||| ||||||||||||||||||| ||||    
T  24460444 ttacaaaaataagctggaaacagcttatgaacatgtcataa 24460404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 36598388 - 36598353
Alignment:
Q  85 gaaataagctgaaaacagcttatgaacatgtaataa 120  Q
    ||||||||||||||||||||||||||||||| ||||    
T  36598388 gaaataagctgaaaacagcttatgaacatgtcataa 36598353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 11048067 - 11048100
Alignment:
Q  87 aataagctgaaaacagcttatgaacatgtaataa 120  Q
    ||||||||||||||||||||||||||||| ||||    
T  11048067 aataagctgaaaacagcttatgaacatgtcataa 11048100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 21453279 - 21453320
Alignment:
Q  33 tgttttcatataagctagaaactgttttcataagctctccta 74  Q
    |||| |||||||||||| |||||||||||||||||| |||||    
T  21453279 tgttctcatataagctataaactgttttcataagctatccta 21453320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 26333308 - 26333341
Alignment:
Q  89 taagctgaaaacagcttatgaacatgtaataaac 122  Q
    ||||||||||||||||||||||||||| ||||||    
T  26333308 taagctgaaaacagcttatgaacatgtcataaac 26333341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 43219674 - 43219641
Alignment:
Q  87 aataagctgaaaacagcttatgaacatgtaataa 120  Q
    ||||||||||||||||||||||||||||| ||||    
T  43219674 aataagctgaaaacagcttatgaacatgtcataa 43219641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 9423626 - 9423590
Alignment:
Q  85 gaaataagctgaaaacagcttatgaacatgtaataaa 121  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  9423626 gaaataagctgaaaacaacttatgaacatgtcataaa 9423590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 25130120 - 25130084
Alignment:
Q  86 aaataagctgaaaacagcttatgaacatgtaataaac 122  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  25130120 aaatatgctgaaaacagcttatgaacatgtcataaac 25130084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 9668 - 9634
Alignment:
Q  86 aaataagctgaaaacagcttatgaacatgtaataa 120  Q
    ||||||||| |||||||||||||||||||||||||    
T  9668 aaataagctaaaaacagcttatgaacatgtaataa 9634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 17258914 - 17258880
Alignment:
Q  86 aaataagctgaaaacagcttatgaacatgtaataa 120  Q
    |||||||||||||||||||||||||||||| ||||    
T  17258914 aaataagctgaaaacagcttatgaacatgtcataa 17258880  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 11615539 - 11615568
Alignment:
Q  85 gaaataagctgaaaacagcttatgaacatg 114  Q
    ||||||||||||||||||||||||||||||    
T  11615539 gaaataagctgaaaacagcttatgaacatg 11615568  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 4855731 - 4855771
Alignment:
Q  80 ttacagaaataagctgaaaacagcttatgaacatgtaataa 120  Q
    |||||||||||||| ||||||||||| ||||||||| ||||    
T  4855731 ttacagaaataagccgaaaacagcttctgaacatgtcataa 4855771  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 113
Target Start/End: Original strand, 12521566 - 12521594
Alignment:
Q  85 gaaataagctgaaaacagcttatgaacat 113  Q
    |||||||||||||||||||||||||||||    
T  12521566 gaaataagctgaaaacagcttatgaacat 12521594  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 12595749 - 12595713
Alignment:
Q  84 agaaataagctgaaaacagcttatgaacatgtaataa 120  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  12595749 agaaataagctgaaaacggcttatgaacatgcaataa 12595713  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 113
Target Start/End: Complemental strand, 28413316 - 28413288
Alignment:
Q  85 gaaataagctgaaaacagcttatgaacat 113  Q
    |||||||||||||||||||||||||||||    
T  28413316 gaaataagctgaaaacagcttatgaacat 28413288  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 17223068 - 17223031
Alignment:
Q  85 gaaataagctgaaaacagcttatgaacatgtaataaac 122  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  17223068 gaaataagttgaaaacagcttatgaacatgtcataaac 17223031  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 45128390 - 45128313
Alignment:
Q  38 tcatataagctagaaactgttttcataagctctccta-aaatattacagaaataagctgaaaacagcttatgaacatg 114  Q
    |||||||||||| ||| ||||||||||| || ||||| |||  |||  |||||||||||||||||||| ||| |||||    
T  45128390 tcatataagctataaattgttttcataaactgtcctataaagcttatggaaataagctgaaaacagctcatggacatg 45128313  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 8469409 - 8469373
Alignment:
Q  85 gaaataagctgaaaacagcttatgaacatgtaataaa 121  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  8469409 gaaataagctgaaaacaacttatgaacatgtcataaa 8469373  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 20907332 - 20907372
Alignment:
Q  33 tgttttcatataagctagaaactgttttcataagctctcct 73  Q
    ||||||||||||||||| |||||||||||| ||||| ||||    
T  20907332 tgttttcatataagctataaactgttttcacaagctatcct 20907372  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 25571299 - 25571335
Alignment:
Q  86 aaataagctgaaaacagcttatgaacatgtaataaac 122  Q
    |||||||||||||||||||||||||||| | ||||||    
T  25571299 aaataagctgaaaacagcttatgaacatatcataaac 25571335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 48719422 - 48719386
Alignment:
Q  86 aaataagctgaaaacagcttatgaacatgtaataaac 122  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  48719422 aaataagctgaaaacagcttacgaacatgtcataaac 48719386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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