View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10496_low_38 (Length: 216)
Name: NF10496_low_38
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 11224920 - 11225108
Alignment:
| Q |
1 |
aagttgattaaatgttgtgcatgtagtatacgagttacacattgttgaaatattctgtgaactgattacaaaatcaaaattctgcaaattgattgtttaa |
100 |
Q |
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| T |
11224920 |
aagttgattaaatgttgtgcatgtagtataagagttacacattgttgaaatattctgcgaactgattacaaaatcaaaattctg-aaattgattgtttaa |
11225018 |
T |
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| Q |
101 |
tgtttatctgattgtaagttgattgtttaattgaaaaagattcttcaaattgattgaaaaagatggatgtaagtatactttaaggcgtgt |
190 |
Q |
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| T |
11225019 |
tgtttacctgattgtaagctgattgtttaattgaaaaagattctgcaaattaattgaaaaagatggatgtaagtatactttaaggcgtgt |
11225108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 11225274 - 11225452
Alignment:
| Q |
4 |
ttgattaaatgttgtgcatgtagtatacgagttacacattgttga-aatattctgtgaactgattacaaaatcaaaattctgcaaattgattgtttaatg |
102 |
Q |
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| T |
11225274 |
ttgattaaatgttatgcatgtactataagtgttgcacattgttgataaaattctggaaactgattgtaaaatcaaaattttgtgaactgattgtttaatg |
11225373 |
T |
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| Q |
103 |
tttatctgattgtaagttgattgtttaattgaaaaagattcttcaaattgattgaaaaagatggatgtaagtatacttt |
181 |
Q |
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| T |
11225374 |
tgtacctgaatgtaagctgattatttaattcaaaaggattctgcaagttgattgaaaaatatagctgtaagtatacttt |
11225452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 11225464 - 11225592
Alignment:
| Q |
3 |
gttgattaaatgttgtgcatgtagtatacgagttacacattgttga-aatattctgtgaactgattacaaaatcaaaattctgcaaattgattgtttaat |
101 |
Q |
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| T |
11225464 |
gttgattaaatgttgtgcatgtagtacaagtgttacgcattcttgacaaaattctgagaactgattgtaaaatcaaaattatgcgaactgattgtttgat |
11225563 |
T |
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| Q |
102 |
gtttatctgattgtaagttgattgtttaa |
130 |
Q |
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| T |
11225564 |
gtatttctgattgtaagttgattgtttaa |
11225592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 11225174 - 11225261
Alignment:
| Q |
94 |
tgtttaatgtttatctgattgtaagttgattgtttaattgaaaaagattcttcaaattgattgaaaaagatggatgtaagtatacttt |
181 |
Q |
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| T |
11225174 |
tgtttgatgtgtacctgaatgtaagttggttgtttaattgaaaaggattctgcaaactgatggaaaaagatagctgtaaatatacttt |
11225261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 11225111 - 11225171
Alignment:
| Q |
3 |
gttgattaaatgttgtgcatgtagtatacgagttacacattgttgaaatattctgtgaact |
63 |
Q |
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| T |
11225111 |
gttgattatatgttgttcatgtagtataagagttacacattgttgataaattctgcgaact |
11225171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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