View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10496_low_5 (Length: 572)
Name: NF10496_low_5
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 57 - 562
Target Start/End: Complemental strand, 23206194 - 23205690
Alignment:
| Q |
57 |
gagagacactgagagtctcgctagcatgcatgcctgttacgtggcattgaaaagttaactcaaatcacaccaaaacccnnnnnnnnnnnn--ttaaagac |
154 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23206194 |
gagagacattgagagtctcgctagcatgcatgcctgttacgtggcattgaaaagttaactcaaatcacaccaaaacccctctctctctctctttaaagac |
23206095 |
T |
|
| Q |
155 |
agaaccactctcactctttcttgcatgcaatttatcaatggagtcacaccaccaaaaccagagaacaaaaatgaatcaacagcacccttcagcaactcca |
254 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
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| T |
23206094 |
agaaccactctcactctttcttgcatgtgctttatcaatggagtcacaccaccaaaaccagaggaagaaaatgaatcaacagcacccttcagctactcca |
23205995 |
T |
|
| Q |
255 |
ttcatggcacctgactggtctaaacttccaaaggatctcttacaactcatctccgaaaagctcgacagtgaattatatcaactccgctttcgttccgttt |
354 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
23205994 |
ttgatggcaccagactggtctaaacttccaaaggatctcttacaactcatttccgaaaagctcgacagcgaattataccaactccgctttcgttccgttt |
23205895 |
T |
|
| Q |
355 |
gttcatcatggcattcttccattcccaaaaaacctttcctaaatttaccttcaaaattcccatttccttccaacaacacgtccaacaataacaccttccc |
454 |
Q |
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||||||||||||| ||||||||||||||||||||| |||| |||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
23205894 |
gttcatcatggcactcttccattcccaaaaaacctctccttgatttaccttccaatttcccatttccttccaacaacacttccaacactaacaccttccc |
23205795 |
T |
|
| Q |
455 |
tctcaccaaacgatctatcttactaatcacacctccccaaaaccaacacaaccaccccccttggttaatcaaaatcggaccagactcacgtgacaaaact |
554 |
Q |
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|||| |||||||||||||||||||||||||||| ||| || | ||| | | ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23205794 |
tctctccaaacgatctatcttactaatcacaccaccc--aatcaaacccta-caccccccttggttaatcaaaatcggaccagactcacgtgataaaact |
23205698 |
T |
|
| Q |
555 |
cgtctctg |
562 |
Q |
| |
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|||||||| |
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| T |
23205697 |
cgtctctg |
23205690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 267 - 385
Target Start/End: Original strand, 9485035 - 9485153
Alignment:
| Q |
267 |
gactggtctaaacttccaaaggatctcttacaactcatctccgaaaagctcgacagtgaattatatcaactccgctttcgttccgtttgttcatcatggc |
366 |
Q |
| |
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|||||||| |||| ||||| |||||| | ||||| || ||| ||| |||||||| ||||| || |||||||| || || ||||||||||||||||||| |
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| T |
9485035 |
gactggtcacaactcccaaaagatctcctccaactaatttcctcaaaactcgacagcgaattctaccaactccgtttccgatccgtttgttcatcatggc |
9485134 |
T |
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| Q |
367 |
attcttccattcccaaaaa |
385 |
Q |
| |
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|||||| |||||||||| |
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| T |
9485135 |
gctcttccgttcccaaaaa |
9485153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 512 - 562
Target Start/End: Original strand, 9485319 - 9485369
Alignment:
| Q |
512 |
cccttggttaatcaaaatcggaccagactcacgtgacaaaactcgtctctg |
562 |
Q |
| |
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||||||||||||||||||||| || |||||||||||| |||||||||||| |
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| T |
9485319 |
cccttggttaatcaaaatcggtcctgactcacgtgaccgaactcgtctctg |
9485369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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