View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10496_low_6 (Length: 513)
Name: NF10496_low_6
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 46587985 - 46587490
Alignment:
| Q |
1 |
atacagtcataggcattaccttcatcagaggcaaagtaataaggcttcaactgattcagctcaatctttatcccctcaccaccaccttgttcagcactac |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46587985 |
atacagtcataggcattgccttcatcagaggcaaagtaataaggcttcaattgattcagctcaatctttatcccctcaccaccaccttgatcagcactac |
46587886 |
T |
|
| Q |
101 |
caagcaactttgctcctctaaattcacacgtcgtgtaactccacatattcggtagcaagtaaacgctgggaacaaccgtggaatttcctgtagggggata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46587885 |
caagcaactttgctcctctaaattcacacgtcgtgtaactccacatattcggtagcaagtaaacgctgggaacaaccgtggaatttcctgtagggggata |
46587786 |
T |
|
| Q |
201 |
cttgaacactgcattatttacgtatgcacaaaccaaaattaatccatcaatcaaatgatgaagaaaaaatatgtatatatgcgcaaacaatggacacaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46587785 |
cttgaacactgcattatttacgtatgcacaaaccaaaattaatccatcaatcaaatgatgaagaaaaaatatgtatatatgcgcaaacaatggacacaca |
46587686 |
T |
|
| Q |
301 |
gcgacatttgataataatttg-nnnnnnntcaaagtgattaaatataattaaatgcgttggtgtcgtgttagtgtcnnnnnnnnnnnnntgttaattga- |
398 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| |
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| T |
46587685 |
gcgacctttgataataatttgaaaaaaaatcaaagtgattaaatataattaaatgtgttggtgttgtgttagtgtc-aaaaaacaaaaatgttaattgat |
46587587 |
T |
|
| Q |
399 |
tatttgtgatgatacatacccaatgtgtcatttatttggaaggggctatttttgatggcccattgagtgtagttagtgcctgcacgccaaccttcag |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46587586 |
tatttgtgatgatacatacccaatgtgtcatttatttggaaggggctatttttgatggcccattgagtgtagttagtgcctgcacgccaaccttcag |
46587490 |
T |
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