View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10496_low_9 (Length: 425)
Name: NF10496_low_9
Description: NF10496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10496_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 41794141 - 41794531
Alignment:
| Q |
18 |
attacaactaccgtccttttctttctacctaaaagcagagtacgtagaaaaactttaactaaagaattggaaactactactactttagtacttaactttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41794141 |
attacaactaccgtccttttctttctacctaaaagcagagtacgtagaaaa-ctttaactaaagaattggaaactactactactttagtacttaactttt |
41794239 |
T |
|
| Q |
118 |
acccttccttgaatcaagtcactactgcattatgactcataactcatatagttctgaatggatcttaatgtcagtcctcaaaccattaatacctaactac |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41794240 |
acccttccttgaatcaaatcactactgcattatgactcataactcatatagttctgaatggatcttaatgtcagtcctcaaaccattaatacctaactac |
41794339 |
T |
|
| Q |
218 |
tagtacactaaaattaactgagtcactcaccactactcatagagtacttaaaactactttgacttgtaatgtagatagattagggataataattaggtaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41794340 |
tagtacactaaaattaactgagtcactcactactactcatagagtacttaaaactactttgacttgtaatgtagatagattagggataataattaggtaa |
41794439 |
T |
|
| Q |
318 |
tacaggccagtgacattgattaggaggcattgaaactgagttattaaaatcttcaacaatgaaagtagtactgttgttgttgttattgtatc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41794440 |
tacaggccagtgacattgattaggaggcattgaaactgagttattaaaatcttcaacaatgaaagtagtactgttgttgttgttattgtatc |
41794531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University