View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10497_high_1 (Length: 516)
Name: NF10497_high_1
Description: NF10497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10497_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 14 - 500
Target Start/End: Complemental strand, 49295264 - 49294778
Alignment:
| Q |
14 |
agatttggtatatcttctaaaacttactacattaatttaattgattttaactccttcctctatttcatttcatagtaataatatgaatcattttctatga |
113 |
Q |
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| T |
49295264 |
agatttggtatatcttctaaaacttactacattaatttaattgattttaactccttcctctatttcatttcatagtaataatatgaatcattttctatga |
49295165 |
T |
|
| Q |
114 |
tacttcttgttataattttattaacttacgtgttcggggtgtggtttttatgaatctattattataggcaaagacaatagcaaagtttgcgaggatgaca |
213 |
Q |
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| T |
49295164 |
tacttcttgttataattttattaacttacgtgttcggggtgtgttttttatgaatctattat---aggcaaagacaatagcaaagtttgcgaggatgaca |
49295068 |
T |
|
| Q |
214 |
gtggaggattcgagaaaacttctacctccaaatttttatccatcatgggtggtatttactcaaagacaaaagtttagttcagttttctccttttatgttg |
313 |
Q |
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| T |
49295067 |
gtggaggattcgagaaaacttctacctccaaatttttatccatcatgggtggtatttactcaaagacaaaagtttagttcagttttctccttttatgttt |
49294968 |
T |
|
| Q |
314 |
aaacttttccttgtagaacctccaaaataaattttgttatagattctaatattaatatgtttcataatacagttaaattggcttaataggcatttagaaa |
413 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49294967 |
taacttttccttgtagaacctccaaaataaaatttgttatagattctaatattaatatgtttcataatacagttaaattggcttaatagccatttagaaa |
49294868 |
T |
|
| Q |
414 |
agatttggccatttgttaatgaggtaatttactttagta---nnnnnnnnnatcaagttttggtatatacattttttgtgaggctatatg |
500 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49294867 |
agatttggccatttgtcaatgaggtaatttactttagtattttttttttttatcaagttttggtatatacattttttgtgaggctatatg |
49294778 |
T |
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