View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10497_high_3 (Length: 318)
Name: NF10497_high_3
Description: NF10497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10497_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 46875147 - 46874845
Alignment:
| Q |
1 |
caagagaatgaacattgaacatagctcatagtttaagtaagccgattaaatgaccggttgtaagcctctgtatgcaactctgtaaagaacgaagaggagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46875147 |
caagagaatgaacattgaacatagctcatagtttaagtaagtggattaaatgaccgattgtaagcctctgtatgcaactctgtaaagaacgaagaggagt |
46875048 |
T |
|
| Q |
101 |
aacagctagagtactatccaagaaacctgtctcatcttgacaggaacaatattaagcaaaactaacatcatagtttgccacataacagatgatatatcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46875047 |
aacagctagagtactatccaagaaacctgtctcatcttgacaggaacaatattaagcaaaactaacatcatagtttgccacataacagatgatatatcac |
46874948 |
T |
|
| Q |
201 |
agcgactgtgaacgcacaatgaatttaccaggccacaaactgtgttctgaattgattgcgaaacagacatacgcaaggagaaactaataaattgagaagc |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46874947 |
agtgactgtgaacgcacaatgaatttaccaggccacaaactgtgttctgaattgattgcgaaacagacatacgcaaggagaaactaataaattgagaagc |
46874848 |
T |
|
| Q |
301 |
tct |
303 |
Q |
| |
|
||| |
|
|
| T |
46874847 |
tct |
46874845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University